Non-Coding RNA Search

Ss1.1-Pig2-145D17.5

Sequence:


               
               GCCCACGCGTCCGGAAAAGAACTATGTTATTGACCCATGTATCATAATGTTGAGTGACAC
CTGCCTTAAGTGTCTGGAGGTCAAGTTGATGTTGATGGATTGGAATGGAATCCAGTCTTT
GTGATAATACCTTAACTTCTGTTCTGGTCCCTGGCATTGGCTTCTGGTTTCTTGATAATC
AGAAGATTATAAAGTGGGAACAGAAGCTGAACTTGTTTTCTAAAAAGGGGACTAAAGCTG
CTTTTGTTCTTGGGAACCTGCTTTGCTTCCAGCAGTTTGGTACCTTCACCCCACGTCTTT
GCCCAGCTATTCACACACCAGAGTGTGGCTGCTTGCCCTAGCAGGGCTTGGTGGAGTTTC
AGCTAATCTTAAGGGTGCATGTGGATTACTTAAAGCTTTAGTATATATGTTTAAAAACAT
GAAATCTCTCTTCTCTTGATAGATGTCAAAGCTTACCATGTGAGCACACCAGCTTCTGAG
CTCTGACAAGTAATAACAGCATGATGTGGAAAAAGATGCAAAGCCCCGTGGAAAATTAGA
GGCCTCATATTATCGGAGTAGCCCCTCATTTTTACTTAAACAGAGATATTTTCCTCTTTA
GCCACACGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTCCGGAAAAGAACTATGTTATTGACCCATGTATCATAATGTTGAGTGACAC
CTGCCTTAAGTGTCTGGAGGTCAAGTTGATGTTGATGGATTGGAATGGAATCCAGTCTTT
GTGATAATACCTTAACTTCTGTTCTGGTCCCTGGCATTGGCTTCTGGTTTCTTGATAATC
AGAAGATTATAAAGTGGGAACAGAAGCTGAACTTGTTTTCTAAAAAGGGGACTAAAGCTG
CTTTTGTTCTTGGGAACCTGCTTTGCTTCCAGCAGTTTGGTACCTTCACCCCACGTCTTT
GCCCAGCTATTCACACACCAGAGTGTGGCTGCTTGCCCTAGCAGGGCTTGGTGGAGTTTC
AGCTAATCTTAAGGGTGCATGTGGATTACTTAAAGCTTTAGTATATATGTTTAAAAACAT
GAAATCTCTCTTCTCTTGATAGATGTCAAAGCTTACCATGTGAGCACACCAGCTTCTGAG
CTCTGACAAGTAATAACAGCATGATGTGGAAAAAGATGCAAAGCCCCGTGGAAAATTAGA
GGCCTCATATTATCGGAGTAGCCCCTCATTTTTACTTAAACAGAGATATTTTCCTCTTTA
GCCACACGGGGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               137-296, - strand, RNAz p=0.999941
               

               
               439-555, - strand, RNAz p=0.820377

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               137-296, - strand, RNAz p=0.999941
               

               
               439-555, - strand, RNAz p=0.820377

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               156-250, + strand, RNAmicro p=0.976463

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               156-250, + strand, RNAmicro p=0.976463

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               17-612, gnl|bosTau2|chr19 (17949238-17948663)
               

               
               17-612, gnl|Hg17|chr17 (2266877-2266265)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-612, gnl|bosTau2|chr19 (17949238-17948663)
               

               
               17-612, gnl|Hg17|chr17 (2266877-2266265)

	137-296, - strand, RNAz p=0.999941
	439-555, - strand, RNAz p=0.820377

	17-612, gnl\|bosTau2\|chr19 (17949238-17948663)
	17-612, gnl\|Hg17\|chr17 (2266877-2266265)