Non-Coding RNA Search

Ss1.1-Pig2-14C11.5

Sequence:


               
               GCAGCATCATGCTGCGAGTTTCTGCTTTTCAGCTGCTGGGACGCAGGGGGGCGAGTAGGG
TCTGGAGCTTGGAGGACTTTAGCCTACGCCACTACAGCTCGGGCGCTCCGAGTGTCCGCG
AGGATACTCGCGACGCGCGCGCCTACTTCACGACACCCATTTTCTACGTGAACGCGGCGC
CGCACATCGGGCACCTGTACTCCGCGCTTCTGGCAGACGCCTTGTGCCGCCACCATCGCC
TCCGAGTTTCCAGCGCCGCCGCCACGCGATTCTCCACTGGTACCGACGAGCACGGCCTGA
AGATTCAGCAGGCAGCAGCCACTGCGGGCCTGGCCCCGTCCGAGCTGTGCGACAGAGTCT
CTGCCCAGTTCCAGCAGCTTTTCCATTGCGCCTCTGACGAGTGCTTCTTGCCTGAAGCCA
AGGTCACCAGGCAGCCGGGCCCGTCGGGGGATTTGTGTCCTGTGTCTCTGGAGAGTGGGC
ATCCGGTCTCCTGGACTAAGGAAGAAAACTACATTTTCAGGCTTTCCCAGTTCCGGGAGC
CTCTCCAGCGGTGGCTGAGGGGCGACCCGCAGGCCATCACCCCGGAGCCATTCCATCGCG
CAGTCCTCCAGTGGCTGGACGAGGAGCTGCCGGACCTATCCGTCTCTCGAAGGAGGAGCC
ACTTGCACTGGGGCATTCCGGTGCCCGGGGACGATTCGCAGACCATCTACGTCTGGCTGG
ATGCCTTGGTCAACTACCTTACTGTAATTGGCTACCCGAACGCTGAGTTCCAATCCTGGT
GGCCGACCACCTCTCATATCATAGGCAAGGACATTCTCAAATTCCATGCTATTTATTGGC
CTGCCCTCCTCTTAGGGGCCGGCATGAGCCCACCACACCGCATCTACGTCCACTCCCATT
GGACTGTCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCATCATGCTGCGAGTTTCTGCTTTTCAGCTGCTGGGACGCAGGGGGGCGAGTAGGG
TCTGGAGCTTGGAGGACTTTAGCCTACGCCACTACAGCTCGGGCGCTCCGAGTGTCCGCG
AGGATACTCGCGACGCGCGCGCCTACTTCACGACACCCATTTTCTACGTGAACGCGGCGC
CGCACATCGGGCACCTGTACTCCGCGCTTCTGGCAGACGCCTTGTGCCGCCACCATCGCC
TCCGAGTTTCCAGCGCCGCCGCCACGCGATTCTCCACTGGTACCGACGAGCACGGCCTGA
AGATTCAGCAGGCAGCAGCCACTGCGGGCCTGGCCCCGTCCGAGCTGTGCGACAGAGTCT
CTGCCCAGTTCCAGCAGCTTTTCCATTGCGCCTCTGACGAGTGCTTCTTGCCTGAAGCCA
AGGTCACCAGGCAGCCGGGCCCGTCGGGGGATTTGTGTCCTGTGTCTCTGGAGAGTGGGC
ATCCGGTCTCCTGGACTAAGGAAGAAAACTACATTTTCAGGCTTTCCCAGTTCCGGGAGC
CTCTCCAGCGGTGGCTGAGGGGCGACCCGCAGGCCATCACCCCGGAGCCATTCCATCGCG
CAGTCCTCCAGTGGCTGGACGAGGAGCTGCCGGACCTATCCGTCTCTCGAAGGAGGAGCC
ACTTGCACTGGGGCATTCCGGTGCCCGGGGACGATTCGCAGACCATCTACGTCTGGCTGG
ATGCCTTGGTCAACTACCTTACTGTAATTGGCTACCCGAACGCTGAGTTCCAATCCTGGT
GGCCGACCACCTCTCATATCATAGGCAAGGACATTCTCAAATTCCATGCTATTTATTGGC
CTGCCCTCCTCTTAGGGGCCGGCATGAGCCCACCACACCGCATCTACGTCCACTCCCATT
GGACTGTCTGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61884569|ref|XP_592623.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61884569|ref|XP_592623.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               464-583, - strand, RNAz p=0.715404
               

               
               664-912, - strand, RNAz p=0.890655

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               464-583, - strand, RNAz p=0.715404
               

               
               664-912, - strand, RNAz p=0.890655

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-384, gnl|bosTau2|chr2 (52132839-52133219)
               

               
               4-384, gnl|Hg17|chr2 (198395631-198396011)
               

               
               4-384, gnl|Mm7|chr1 (55484545-55484904)
               


               
               385-912, gnl|bosTau2|chr2 (52133349-52133876)
               

               
               385-912, gnl|Hg17|chr2 (198396141-198396668)
               

               
               385-912, gnl|Mm7|chr1 (55485034-55485561)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-384, gnl|bosTau2|chr2 (52132839-52133219)
               

               
               4-384, gnl|Hg17|chr2 (198395631-198396011)
               

               
               4-384, gnl|Mm7|chr1 (55484545-55484904)
               


               
               385-912, gnl|bosTau2|chr2 (52133349-52133876)
               

               
               385-912, gnl|Hg17|chr2 (198396141-198396668)
               

               
               385-912, gnl|Mm7|chr1 (55485034-55485561)

	464-583, - strand, RNAz p=0.715404
	664-912, - strand, RNAz p=0.890655

	4-384, gnl\|bosTau2\|chr2 (52132839-52133219)
	4-384, gnl\|Hg17\|chr2 (198395631-198396011)
	4-384, gnl\|Mm7\|chr1 (55484545-55484904)

	385-912, gnl\|bosTau2\|chr2 (52133349-52133876)
	385-912, gnl\|Hg17\|chr2 (198396141-198396668)
	385-912, gnl\|Mm7\|chr1 (55485034-55485561)