Non-Coding RNA Search

Ss1.1-Pig2-14N02.5

Sequence:


               
               GAAGGAAGAGGTTGGCGAGGCAGCCGGAACATGAAGGAGGAACCGGCTCCAGAGTTGGGT
TGTCGCAAGACCAAGCCCGCGGGGAGCACAGGAGGCTCCCTGTCCCCCGATGTGGACTTC
CTGCTGTGCCAAGGTGACCAGGTCTTCCCAGCCTACAGACCACTTCCAGACACAGCGGAT
GCCCACGGCCTGTCCTGTGCCAGCTGGCTATGTTCCTTGCCTCTGGCACCGGCTGGGTCT
GCCCTGCTGGCCTGTCCCCAGGGCTTGGACCTGTACCTGTGTGCCCTGCAGTCGGCACCC
TCGGGCACAGCCCTGAGGGGTCTCAGAGAGGATGTCTTGAGCCCAAGGCACCAGCCACTA
AGGCCACCTGCCAGCTCCTCCAATGATGAGAAACTCCGAGCCAAGGACCTTCTGAATAAG
GACAAGATGGGAAGCCAGTTGGAAAAAGCTGGCGAGGGGACCCCCTGCCCATCCTTCTCT
TCTCACAACAGTTCTTCCCTAAACCCCTGGCAGAATAAAAAGAACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGAAGAGGTTGGCGAGGCAGCCGGAACATGAAGGAGGAACCGGCTCCAGAGTTGGGT
TGTCGCAAGACCAAGCCCGCGGGGAGCACAGGAGGCTCCCTGTCCCCCGATGTGGACTTC
CTGCTGTGCCAAGGTGACCAGGTCTTCCCAGCCTACAGACCACTTCCAGACACAGCGGAT
GCCCACGGCCTGTCCTGTGCCAGCTGGCTATGTTCCTTGCCTCTGGCACCGGCTGGGTCT
GCCCTGCTGGCCTGTCCCCAGGGCTTGGACCTGTACCTGTGTGCCCTGCAGTCGGCACCC
TCGGGCACAGCCCTGAGGGGTCTCAGAGAGGATGTCTTGAGCCCAAGGCACCAGCCACTA
AGGCCACCTGCCAGCTCCTCCAATGATGAGAAACTCCGAGCCAAGGACCTTCTGAATAAG
GACAAGATGGGAAGCCAGTTGGAAAAAGCTGGCGAGGGGACCCCCTGCCCATCCTTCTCT
TCTCACAACAGTTCTTCCCTAAACCCCTGGCAGAATAAAAAGAACCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5T147_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T147_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               138-290, - strand, RNAz p=0.923385

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               138-290, - strand, RNAz p=0.923385

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               207-307, - strand, RNAmicro p=0.900837

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               207-307, - strand, RNAmicro p=0.900837

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               138-345, gnl|bosTau2|chr2 (78214538-78214331)
               

               
               138-345, gnl|Hg17|chr1 (26378434-26378227)
               

               
               138-345, gnl|Mm7|chr4 (133432886-133433099)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-345, gnl|bosTau2|chr2 (78214538-78214331)
               

               
               138-345, gnl|Hg17|chr1 (26378434-26378227)
               

               
               138-345, gnl|Mm7|chr4 (133432886-133433099)

	138-345, gnl\|bosTau2\|chr2 (78214538-78214331)
	138-345, gnl\|Hg17\|chr1 (26378434-26378227)
	138-345, gnl\|Mm7\|chr4 (133432886-133433099)