Non-Coding RNA Search

Ss1.1-Pig2-15E18.5

Sequence:


               
               GGGGGGGCTGTCGGGCAGCACTACGGTGACGGTCACCCTCAGCGATGTCAACGACAACCC
CCCCAAGTTCCCGCAGAGCCTGTACCAGTTTTCCGTGGTGGAGACCGCTGGGCCGGGCAC
CCTGGTGGGCCGGCTGCAGGCCCAGGACCCAGACCTGGGGGACAACGCCCTCATGGCATA
CAGCATCCTGGACGGGGAGGGGTCCGAGGCCTTCAGCATCAGCACAGACTCCCAGGGTCG
AGATGGGCTCCTCACTGTCCGCAAGCCCCTGGACTTCGAGAACCGTCGCTCCTACTCCTT
CCGTGTGGAGGCCACCAACACGCTCATCGACCCAGCCTATCTGCGGCGAGGGCCCTTCAA
GGACGTGGCCTCAATGCGCGTGGCTGTGCAGGACGCCCCAGAGCCACCTGCCTTCTCCCA
GGCTGCCTACCACCTGTCGGTGCCCGAAAACAAGGCTCCCGGGACCCTGGTGGGCCAGGT
GTCAGCCTCTGACCTGGACTCCCCAGCCAGTCCAATCAGGTACTCCATCCTCCCCCACTC
GGACCCGGAGCGCTGCTTCTCCATTGAGCCTGAAGACGGCACCATCCGCACGGCAGTGCC
CCTGGACCGCGAGGCTCGTGTCTGGCACAACCTCACAGTGCTGGCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGGGCTGTCGGGCAGCACTACGGTGACGGTCACCCTCAGCGATGTCAACGACAACCC
CCCCAAGTTCCCGCAGAGCCTGTACCAGTTTTCCGTGGTGGAGACCGCTGGGCCGGGCAC
CCTGGTGGGCCGGCTGCAGGCCCAGGACCCAGACCTGGGGGACAACGCCCTCATGGCATA
CAGCATCCTGGACGGGGAGGGGTCCGAGGCCTTCAGCATCAGCACAGACTCCCAGGGTCG
AGATGGGCTCCTCACTGTCCGCAAGCCCCTGGACTTCGAGAACCGTCGCTCCTACTCCTT
CCGTGTGGAGGCCACCAACACGCTCATCGACCCAGCCTATCTGCGGCGAGGGCCCTTCAA
GGACGTGGCCTCAATGCGCGTGGCTGTGCAGGACGCCCCAGAGCCACCTGCCTTCTCCCA
GGCTGCCTACCACCTGTCGGTGCCCGAAAACAAGGCTCCCGGGACCCTGGTGGGCCAGGT
GTCAGCCTCTGACCTGGACTCCCCAGCCAGTCCAATCAGGTACTCCATCCTCCCCCACTC
GGACCCGGAGCGCTGCTTCTCCATTGAGCCTGAAGACGGCACCATCCGCACGGCAGTGCC
CCTGGACCGCGAGGCTCGTGTCTGGCACAACCTCACAGTGCTGGCCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28207953|emb|CAD62630.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28207953|emb|CAD62630.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               404-521, - strand, RNAz p=0.744171

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               404-521, - strand, RNAz p=0.744171

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               264-521, gnl|bosTau2|chr10 (14005730-14005987)
               

               
               264-521, gnl|Hg17|chr14 (22592800-22592543)
               

               
               264-521, gnl|Mm7|chr14 (49504443-49504186)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               264-521, gnl|bosTau2|chr10 (14005730-14005987)
               

               
               264-521, gnl|Hg17|chr14 (22592800-22592543)
               

               
               264-521, gnl|Mm7|chr14 (49504443-49504186)

	264-521, gnl\|bosTau2\|chr10 (14005730-14005987)
	264-521, gnl\|Hg17\|chr14 (22592800-22592543)
	264-521, gnl\|Mm7\|chr14 (49504443-49504186)