Non-Coding RNA Search

Ss1.1-Pig2-18L09.5

Sequence:


               
               GGCGCCTGCATGGGAGCAGCCGGGCTCAGAAGGGTGGATATGGTGGCTGGAATTGAAGAA
AATGATCCCTAACCACCCCTTGGGGCTGCTCTGGTCCCCAGGTATGCCATCACTGTCTGG
TATTTTGACGCCAAGGAGAGAGCAGCAGCCAAAGACAAGTATCAGCTAGGTACTTGCTTC
CCAAATGGTGTCCCCTCCCTCAAGTCCTCCCTAGCCCTCAAGCCGCCCCACTGGGGTCAC
TGAATCCTGCCACTCATTCCTCCCTCTTTGCCTACCTTCTCTAGGTAGTTCACTCTCTTG
TTACCCCCAGCATGAGCCCCATTTCTTCCTGGTGCTCTCCCCATTTTCCCAGGGTTCTTT
GACCTTCTTGTCCCTTCCCTGATGACTCAATCACCTGTCTCACCCCCAGCAGCAGGACAG
AAAGGTGTCCAAGTACCTGTATCGCAGCCAACTACGCCCACCTAGTGGCCAGCCCCAGAG
CTGCATGGACAGCCGGCTTGCCCTGACTTCAGAGAGCCCTGGGCCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCCTGCATGGGAGCAGCCGGGCTCAGAAGGGTGGATATGGTGGCTGGAATTGAAGAA
AATGATCCCTAACCACCCCTTGGGGCTGCTCTGGTCCCCAGGTATGCCATCACTGTCTGG
TATTTTGACGCCAAGGAGAGAGCAGCAGCCAAAGACAAGTATCAGCTAGGTACTTGCTTC
CCAAATGGTGTCCCCTCCCTCAAGTCCTCCCTAGCCCTCAAGCCGCCCCACTGGGGTCAC
TGAATCCTGCCACTCATTCCTCCCTCTTTGCCTACCTTCTCTAGGTAGTTCACTCTCTTG
TTACCCCCAGCATGAGCCCCATTTCTTCCTGGTGCTCTCCCCATTTTCCCAGGGTTCTTT
GACCTTCTTGTCCCTTCCCTGATGACTCAATCACCTGTCTCACCCCCAGCAGCAGGACAG
AAAGGTGTCCAAGTACCTGTATCGCAGCCAACTACGCCCACCTAGTGGCCAGCCCCAGAG
CTGCATGGACAGCCGGCTTGCCCTGACTTCAGAGAGCCCTGGGCCCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               273-423, - strand, RNAz p=0.988594

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               273-423, - strand, RNAz p=0.988594

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               63-208, gnl|bosTau2|chr18 (45492482-45492628)
               

               
               63-208, gnl|Hg17|chr19 (46005195-46005322)
               

               
               63-208, gnl|Mm7|chr7 (24078496-24078359)
               


               
               236-526, gnl|bosTau2|chr18 (45492708-45493003)
               

               
               236-526, gnl|Hg17|chr19 (46005392-46005669)
               

               
               236-526, gnl|Mm7|chr7 (24078236-24077979)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-208, gnl|bosTau2|chr18 (45492482-45492628)
               

               
               63-208, gnl|Hg17|chr19 (46005195-46005322)
               

               
               63-208, gnl|Mm7|chr7 (24078496-24078359)
               


               
               236-526, gnl|bosTau2|chr18 (45492708-45493003)
               

               
               236-526, gnl|Hg17|chr19 (46005392-46005669)
               

               
               236-526, gnl|Mm7|chr7 (24078236-24077979)

	63-208, gnl\|bosTau2\|chr18 (45492482-45492628)
	63-208, gnl\|Hg17\|chr19 (46005195-46005322)
	63-208, gnl\|Mm7\|chr7 (24078496-24078359)

	236-526, gnl\|bosTau2\|chr18 (45492708-45493003)
	236-526, gnl\|Hg17\|chr19 (46005392-46005669)
	236-526, gnl\|Mm7\|chr7 (24078236-24077979)