Non-Coding RNA Search

Ss1.1-Pig2-1C11.5

Sequence:


               
               CTGGCGCCACTGCCCAGCCGCCGGGTCTACTGCTCCCTGCTGGAAACCGGGGGGCAGGTC
TATGCCATCGGGGGATGTGACGACAACGGCGTCCCCATGGATTGCTTTGAGGTCTACTCC
CCCGAGGCCGACCAGTGGACCGCCCTGCCCCCCCTGCCCACGGCCCGAGCCGGGGTGGCC
GTCACCGCCCTGGGGAAGCGGATCATGGTGATCGGGGGTGTGGGCACCAGTCAGCTGCCC
CTGAAGGTCGTGGAGATGTACAACATCGATGAGGGCAAGTGGAAGAAGAGGAGCATGCTG
CGTGAGGCCGCCATGGGCATTTCGGTCACGGCCAAAGATTATCGCGTGTATGCGGCAGGC
GGGATGGGCCTATACCTCCGTCCACACAACCACCTCCAACACTATGACATGCTCAAGGAC
CATGTGGGTGTCTCTGGCCCCCATGCCCACCCCAAGATATGCTGCCACCTCCTTCCTCCG
AGGTTCCAAGATCTATGTGCTGGGCGGACGACAGTCCAAGTACGCAGTCAATGCCTTCGA
GGTCTTTGACATCGAGACTCGCTCCTGGACCAAATTCCCCAATATTCCCTGTAAGCGGGC
CTTCTCCAGCTTCGTGACCCTGGACGACCGCTTGTACAGCCTGGGTGGCCTGCGGCAGGG
TCGGCTCTACCGACAGCCCAAGTTCCTCCGGACCATGGACGTGTTTGACATGGAACAGGG
GGGTTGGCTGAAGATGGAGCGCTCGTTCTTCCTCAAGAAGCGACGGGCAGACCTTGTGGC
CGGCTCTGTGAGTGGACGGGTCATCGTGGCTGGAGGCCTTGGGAACCAACCCACTGTCCT
GGAGACAGCAGAGGCGTTCCACCCAGGGAAGAACAAGTGGGAGGTCCTCCCTGCCATGCC
CACGCCCCGCTGTGCCTGCTCCAGCATCGTCATCAAGAACTGCCTCCTGGCCGTGNGGGG
GCGTCAACCAGGGTCTGAGTGACGCCGTGGAAGCCCTGTGTGTCTCTGACTCCTAGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCGCCACTGCCCAGCCGCCGGGTCTACTGCTCCCTGCTGGAAACCGGGGGGCAGGTC
TATGCCATCGGGGGATGTGACGACAACGGCGTCCCCATGGATTGCTTTGAGGTCTACTCC
CCCGAGGCCGACCAGTGGACCGCCCTGCCCCCCCTGCCCACGGCCCGAGCCGGGGTGGCC
GTCACCGCCCTGGGGAAGCGGATCATGGTGATCGGGGGTGTGGGCACCAGTCAGCTGCCC
CTGAAGGTCGTGGAGATGTACAACATCGATGAGGGCAAGTGGAAGAAGAGGAGCATGCTG
CGTGAGGCCGCCATGGGCATTTCGGTCACGGCCAAAGATTATCGCGTGTATGCGGCAGGC
GGGATGGGCCTATACCTCCGTCCACACAACCACCTCCAACACTATGACATGCTCAAGGAC
CATGTGGGTGTCTCTGGCCCCCATGCCCACCCCAAGATATGCTGCCACCTCCTTCCTCCG
AGGTTCCAAGATCTATGTGCTGGGCGGACGACAGTCCAAGTACGCAGTCAATGCCTTCGA
GGTCTTTGACATCGAGACTCGCTCCTGGACCAAATTCCCCAATATTCCCTGTAAGCGGGC
CTTCTCCAGCTTCGTGACCCTGGACGACCGCTTGTACAGCCTGGGTGGCCTGCGGCAGGG
TCGGCTCTACCGACAGCCCAAGTTCCTCCGGACCATGGACGTGTTTGACATGGAACAGGG
GGGTTGGCTGAAGATGGAGCGCTCGTTCTTCCTCAAGAAGCGACGGGCAGACCTTGTGGC
CGGCTCTGTGAGTGGACGGGTCATCGTGGCTGGAGGCCTTGGGAACCAACCCACTGTCCT
GGAGACAGCAGAGGCGTTCCACCCAGGGAAGAACAAGTGGGAGGTCCTCCCTGCCATGCC
CACGCCCCGCTGTGCCTGCTCCAGCATCGTCATCAAGAACTGCCTCCTGGCCGTGNGGGG
GCGTCAACCAGGGTCTGAGTGACGCCGTGGAAGCCCTGTGTGTCTCTGACTCCTAGCTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7022971|dbj|BAA91787.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7022971|dbj|BAA91787.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.923539
               

               
               622-741, - strand, RNAz p=0.669353

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.923539
               

               
               622-741, - strand, RNAz p=0.669353

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-337, gnl|bosTau2|chr16 (1195960-1195624)
               

               
               1-337, gnl|canFam2|chr38 (4838582-4838807)
               

               
               1-337, gnl|danRer3|chr11 (40142696-40142474)
               

               
               1-337, gnl|echTel1|scaffold_161508 (1819-2044)
               

               
               1-337, gnl|fr1|chrUn (268281888-268282098)
               

               
               1-337, gnl|galGal2|chr26 (694374-694599)
               

               
               1-337, gnl|hg17|chr1 (202043999-202044224)
               

               
               1-337, gnl|Hg17|chr1 (202044350-202044014)
               

               
               1-337, gnl|mm7|chr1 (132200127-132199902)
               

               
               1-337, gnl|Mm7|chr1 (132199774-132200110)
               

               
               1-337, gnl|monDom2|scaffold_13 (6978086-6978311)
               

               
               1-337, gnl|panTro1|chr1 (184999036-184999261)
               

               
               1-337, gnl|rheMac2|chr1 (165069611-165069386)
               

               
               1-337, gnl|rn3|chr13 (45202981-45202756)
               

               
               1-337, gnl|tetNig1|chr11 (10528520-10528730)
               

               
               1-337, gnl|xenTro1|scaffold_19 (3449395-3449608)
               


               
               503-753, gnl|bosTau2|chr16 (1192588-1192338)
               

               
               503-753, gnl|Mm7|chr1 (132203397-132203635)
               


               
               821-1019, gnl|bosTau2|chr16 (1190759-1190562)
               

               
               821-1019, gnl|Hg17|chr1 (202038378-202038181)
               

               
               821-1019, gnl|Mm7|chr1 (132205056-132205253)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-337, gnl|bosTau2|chr16 (1195960-1195624)
               

               
               1-337, gnl|canFam2|chr38 (4838582-4838807)
               

               
               1-337, gnl|danRer3|chr11 (40142696-40142474)
               

               
               1-337, gnl|echTel1|scaffold_161508 (1819-2044)
               

               
               1-337, gnl|fr1|chrUn (268281888-268282098)
               

               
               1-337, gnl|galGal2|chr26 (694374-694599)
               

               
               1-337, gnl|hg17|chr1 (202043999-202044224)
               

               
               1-337, gnl|Hg17|chr1 (202044350-202044014)
               

               
               1-337, gnl|mm7|chr1 (132200127-132199902)
               

               
               1-337, gnl|Mm7|chr1 (132199774-132200110)
               

               
               1-337, gnl|monDom2|scaffold_13 (6978086-6978311)
               

               
               1-337, gnl|panTro1|chr1 (184999036-184999261)
               

               
               1-337, gnl|rheMac2|chr1 (165069611-165069386)
               

               
               1-337, gnl|rn3|chr13 (45202981-45202756)
               

               
               1-337, gnl|tetNig1|chr11 (10528520-10528730)
               

               
               1-337, gnl|xenTro1|scaffold_19 (3449395-3449608)
               


               
               503-753, gnl|bosTau2|chr16 (1192588-1192338)
               

               
               503-753, gnl|Mm7|chr1 (132203397-132203635)
               


               
               821-1019, gnl|bosTau2|chr16 (1190759-1190562)
               

               
               821-1019, gnl|Hg17|chr1 (202038378-202038181)
               

               
               821-1019, gnl|Mm7|chr1 (132205056-132205253)

	40-159, - strand, RNAz p=0.923539
	622-741, - strand, RNAz p=0.669353

	1-337, gnl\|bosTau2\|chr16 (1195960-1195624)
	1-337, gnl\|canFam2\|chr38 (4838582-4838807)
	1-337, gnl\|danRer3\|chr11 (40142696-40142474)
	1-337, gnl\|echTel1\|scaffold_161508 (1819-2044)
	1-337, gnl\|fr1\|chrUn (268281888-268282098)
	1-337, gnl\|galGal2\|chr26 (694374-694599)
	1-337, gnl\|hg17\|chr1 (202043999-202044224)
	1-337, gnl\|Hg17\|chr1 (202044350-202044014)
	1-337, gnl\|mm7\|chr1 (132200127-132199902)
	1-337, gnl\|Mm7\|chr1 (132199774-132200110)
	1-337, gnl\|monDom2\|scaffold_13 (6978086-6978311)
	1-337, gnl\|panTro1\|chr1 (184999036-184999261)
	1-337, gnl\|rheMac2\|chr1 (165069611-165069386)
	1-337, gnl\|rn3\|chr13 (45202981-45202756)
	1-337, gnl\|tetNig1\|chr11 (10528520-10528730)
	1-337, gnl\|xenTro1\|scaffold_19 (3449395-3449608)

	503-753, gnl\|bosTau2\|chr16 (1192588-1192338)
	503-753, gnl\|Mm7\|chr1 (132203397-132203635)

	821-1019, gnl\|bosTau2\|chr16 (1190759-1190562)
	821-1019, gnl\|Hg17\|chr1 (202038378-202038181)
	821-1019, gnl\|Mm7\|chr1 (132205056-132205253)