Non-Coding RNA Search

Ss1.1-Pig2-20L20.5

Sequence:


               
               GCCCACGCGTCCGGCACGCCCTCTTACCCCCCTCGCTCTGCCCCTCATGTGCCTTCCTGC
CTGCATCGCCAGGGACTGGAGTCCCGGGGATGGAGACCCCAGCTGAGTTTCTGAGGCAGG
AACCAGCCTCATCGGTGAAGTGGGCACAGTCCTGTCTGGTGAGGACGTGCCAGTACCTTC
TGAGAGCGCATCTGCCACTTGGAAAAGCTCCAGCGTCACGTCCCTCCTGTCCGCCAGCTC
TCTCCTCACTCAGCCTGACCCCGCTGCCATGGCGTGGGCAGAGACCTCTTGGGTCGGGGG
TGCCCCCAAGCAGTGGCAGCAGCTGAAGGGAGGTCTCGGTGTTGATCCCTTAACCCCTCT
GTGTCCCCTCCCCTGACCCCGCAGGTGGAGGTAACTGAGTCCTCCAACCAGGATGCGCTC
TCGGGCTCCAGCGACCTGCTGGAGCTGCTGCTGCAAGAGGACTCGCGCTCTGGCACAGGC
TCTGCGGCCTCGGGCTCCTTGGGCTCTGCCTTGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTCCGGCACGCCCTCTTACCCCCCTCGCTCTGCCCCTCATGTGCCTTCCTGC
CTGCATCGCCAGGGACTGGAGTCCCGGGGATGGAGACCCCAGCTGAGTTTCTGAGGCAGG
AACCAGCCTCATCGGTGAAGTGGGCACAGTCCTGTCTGGTGAGGACGTGCCAGTACCTTC
TGAGAGCGCATCTGCCACTTGGAAAAGCTCCAGCGTCACGTCCCTCCTGTCCGCCAGCTC
TCTCCTCACTCAGCCTGACCCCGCTGCCATGGCGTGGGCAGAGACCTCTTGGGTCGGGGG
TGCCCCCAAGCAGTGGCAGCAGCTGAAGGGAGGTCTCGGTGTTGATCCCTTAACCCCTCT
GTGTCCCCTCCCCTGACCCCGCAGGTGGAGGTAACTGAGTCCTCCAACCAGGATGCGCTC
TCGGGCTCCAGCGACCTGCTGGAGCTGCTGCTGCAAGAGGACTCGCGCTCTGGCACAGGC
TCTGCGGCCTCGGGCTCCTTGGGCTCTGCCTTGGGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               87-215, - strand, RNAz p=0.999747
               

               
               347-463, - strand, RNAz p=0.993057

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-215, - strand, RNAz p=0.999747
               

               
               347-463, - strand, RNAz p=0.993057

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-516, gnl|bosTau2|chr2 (77472700-77472214)
               

               
               50-516, gnl|Hg17|chr17 (7987228-7986747)
               

               
               50-516, gnl|Mm7|chr11 (69188723-69189238)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-516, gnl|bosTau2|chr2 (77472700-77472214)
               

               
               50-516, gnl|Hg17|chr17 (7987228-7986747)
               

               
               50-516, gnl|Mm7|chr11 (69188723-69189238)

	87-215, - strand, RNAz p=0.999747
	347-463, - strand, RNAz p=0.993057

	50-516, gnl\|bosTau2\|chr2 (77472700-77472214)
	50-516, gnl\|Hg17\|chr17 (7987228-7986747)
	50-516, gnl\|Mm7\|chr11 (69188723-69189238)