Non-Coding RNA Search

Ss1.1-Pig2-21L02.5

Sequence:


               
               GGGTTTGCATCAGGCCAAGCCCAGCATCCGAGATCAATTCAAGTCAACAGATGAAATGCC
CCTAGGGTTTGCTTAGCCCTGTGGTGAGATACAAAGAAAATCAAAAGCAGGGTCCCCTGT
CTTAAAAAGCAGGAGACAGCTTTCTCTGATGGAGTCACTCTTACATGACTGCCCCACTTG
AAGGTGTGCAAAGGAATCAGGAAAAGCTCAGAGACACACGCAGGACCACTTCCTAAACAG
CGCTATCAGTGAAGTGGCTCAGCCACTCTGGGATCCAGGGAATAGTTTCATCCCCCTGTA
GACTCCTATGGCTGTGTGTCTGTCCCAGTCTAGATAAGCCCAGTGATCCAGCATGAAAGA
GCCCTGGGTGAGCAGTCAGCAGCCCATGGCTNTATATCCATCACTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTTGCATCAGGCCAAGCCCAGCATCCGAGATCAATTCAAGTCAACAGATGAAATGCC
CCTAGGGTTTGCTTAGCCCTGTGGTGAGATACAAAGAAAATCAAAAGCAGGGTCCCCTGT
CTTAAAAAGCAGGAGACAGCTTTCTCTGATGGAGTCACTCTTACATGACTGCCCCACTTG
AAGGTGTGCAAAGGAATCAGGAAAAGCTCAGAGACACACGCAGGACCACTTCCTAAACAG
CGCTATCAGTGAAGTGGCTCAGCCACTCTGGGATCCAGGGAATAGTTTCATCCCCCTGTA
GACTCCTATGGCTGTGTGTCTGTCCCAGTCTAGATAAGCCCAGTGATCCAGCATGAAAGA
GCCCTGGGTGAGCAGTCAGCAGCCCATGGCTNTATATCCATCACTAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-200, - strand, RNAz p=0.987303

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-200, - strand, RNAz p=0.987303

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-408, gnl|bosTau2|chr27 (6324041-6323643)
               

               
               3-408, gnl|canFam2|chr16 (51089380-51088612)
               

               
               3-408, gnl|dasNov1|scaffold_3784 (66367-65783)
               

               
               3-408, gnl|echTel1|scaffold_259751 (13544-14154)
               

               
               3-408, gnl|hg17|chr4 (183349722-183350316)
               

               
               3-408, gnl|Hg17|chr4 (183350112-183349729)
               

               
               3-408, gnl|loxAfr1|scaffold_3768 (14773-14150)
               

               
               3-408, gnl|mm7|chr8 (47696240-47695649)
               

               
               3-408, gnl|Mm7|chr8 (47695841-47696231)
               

               
               3-408, gnl|oryCun1|scaffold_212851 (226681-226089)
               

               
               3-408, gnl|panTro1|chr3 (201610733-201611327)
               

               
               3-408, gnl|rheMac2|chr5 (174161351-174161983)
               

               
               3-408, gnl|rn3|chr16 (46391772-46392379)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-408, gnl|bosTau2|chr27 (6324041-6323643)
               

               
               3-408, gnl|canFam2|chr16 (51089380-51088612)
               

               
               3-408, gnl|dasNov1|scaffold_3784 (66367-65783)
               

               
               3-408, gnl|echTel1|scaffold_259751 (13544-14154)
               

               
               3-408, gnl|hg17|chr4 (183349722-183350316)
               

               
               3-408, gnl|Hg17|chr4 (183350112-183349729)
               

               
               3-408, gnl|loxAfr1|scaffold_3768 (14773-14150)
               

               
               3-408, gnl|mm7|chr8 (47696240-47695649)
               

               
               3-408, gnl|Mm7|chr8 (47695841-47696231)
               

               
               3-408, gnl|oryCun1|scaffold_212851 (226681-226089)
               

               
               3-408, gnl|panTro1|chr3 (201610733-201611327)
               

               
               3-408, gnl|rheMac2|chr5 (174161351-174161983)
               

               
               3-408, gnl|rn3|chr16 (46391772-46392379)

	3-408, gnl\|bosTau2\|chr27 (6324041-6323643)
	3-408, gnl\|canFam2\|chr16 (51089380-51088612)
	3-408, gnl\|dasNov1\|scaffold_3784 (66367-65783)
	3-408, gnl\|echTel1\|scaffold_259751 (13544-14154)
	3-408, gnl\|hg17\|chr4 (183349722-183350316)
	3-408, gnl\|Hg17\|chr4 (183350112-183349729)
	3-408, gnl\|loxAfr1\|scaffold_3768 (14773-14150)
	3-408, gnl\|mm7\|chr8 (47696240-47695649)
	3-408, gnl\|Mm7\|chr8 (47695841-47696231)
	3-408, gnl\|oryCun1\|scaffold_212851 (226681-226089)
	3-408, gnl\|panTro1\|chr3 (201610733-201611327)
	3-408, gnl\|rheMac2\|chr5 (174161351-174161983)
	3-408, gnl\|rn3\|chr16 (46391772-46392379)