Non-Coding RNA Search

Ss1.1-Pig2-21O14.5

Sequence:


               
               ACCTGTAGGGCGCCGCCCCCGGAGTCGAGGGGGACACAGCCCCTGCCACCATCAGACTCG
CCGCAGCCCCTTGCACCATCCCCGGGCCCCTGGGGGCTGGAGGCTATGGCTGGAGGAGAC
ATAGACCTGAAACCCAAGCTGAGGACAGTTACAAAGCTAAATGTTTTCCTTTGAGCTTCC
TGGTGGCCTAGGGGAAAAGAGACCTGGGGGAGGAGGTGTTCCTACATCCTTCAGCCCAAT
GTGGATTCTTCCTGGTGCCTGGATTGCTGTCCAGGCAGGGACACAAGGGGAGGAAGTTGG
GGCTGGGGATGCTGGGCATGGTCAGGGCCTTGCTGATTCTGGGGAGCCACAGGCTGCAAT
GGAGCTAGGAGAGGGGAGGATGAGGATGAGCCAATGCCCAGATCCTTCAACCCTCCCCCC
GCCCCCAGCTGCCTTGCTCGAGTAACTGGGGAGCTGACCATGACCTTCCCTGCCGGCATC
GTGCGTGTGTTCAGTGGAACCCCACCCCCACGAGTCCTCAGGTTACGCCTTGCGCACACG
GCCTCAATTGAGCACTTCCAACCCAATGCCGACCTGCTCTTCAGTGACCCCTCCCAGAGT
GACCCTGAGACCAAAGACTTCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTGTAGGGCGCCGCCCCCGGAGTCGAGGGGGACACAGCCCCTGCCACCATCAGACTCG
CCGCAGCCCCTTGCACCATCCCCGGGCCCCTGGGGGCTGGAGGCTATGGCTGGAGGAGAC
ATAGACCTGAAACCCAAGCTGAGGACAGTTACAAAGCTAAATGTTTTCCTTTGAGCTTCC
TGGTGGCCTAGGGGAAAAGAGACCTGGGGGAGGAGGTGTTCCTACATCCTTCAGCCCAAT
GTGGATTCTTCCTGGTGCCTGGATTGCTGTCCAGGCAGGGACACAAGGGGAGGAAGTTGG
GGCTGGGGATGCTGGGCATGGTCAGGGCCTTGCTGATTCTGGGGAGCCACAGGCTGCAAT
GGAGCTAGGAGAGGGGAGGATGAGGATGAGCCAATGCCCAGATCCTTCAACCCTCCCCCC
GCCCCCAGCTGCCTTGCTCGAGTAACTGGGGAGCTGACCATGACCTTCCCTGCCGGCATC
GTGCGTGTGTTCAGTGGAACCCCACCCCCACGAGTCCTCAGGTTACGCCTTGCGCACACG
GCCTCAATTGAGCACTTCCAACCCAATGCCGACCTGCTCTTCAGTGACCCCTCCCAGAGT
GACCCTGAGACCAAAGACTTCTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61825757|ref|XP_587417.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61825757|ref|XP_587417.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               341-435, - strand, RNAz p=0.999854

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               341-435, - strand, RNAz p=0.999854

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-118, gnl|bosTau2|chr7 (4629338-4629221)
               

               
               1-118, gnl|canFam2|chr20 (48115444-48115319)
               

               
               1-118, gnl|echTel1|scaffold_294765 (2998-2873)
               

               
               1-118, gnl|fr1|chrUn (175426688-175426804)
               

               
               1-118, gnl|hg17|chr19 (17750541-17750666)
               

               
               1-118, gnl|Hg17|chr19 (17750576-17750693)
               

               
               1-118, gnl|mm7|chr8 (70179485-70179387)
               

               
               1-118, gnl|monDom2|scaffold_209 (509111-509208)
               

               
               1-118, gnl|rheMac2|chr19 (17342689-17342814)
               

               
               1-118, gnl|rn3|chr16 (18908390-18908292)
               

               
               1-118, gnl|tetNig1|chr1 (15355903-15355798)
               


               
               156-589, gnl|bosTau2|chr7 (4626326-4625875)
               

               
               156-589, gnl|Hg17|chr19 (17754541-17754986)
               

               
               156-589, gnl|Mm7|chr8 (70178052-70177647)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-118, gnl|bosTau2|chr7 (4629338-4629221)
               

               
               1-118, gnl|canFam2|chr20 (48115444-48115319)
               

               
               1-118, gnl|echTel1|scaffold_294765 (2998-2873)
               

               
               1-118, gnl|fr1|chrUn (175426688-175426804)
               

               
               1-118, gnl|hg17|chr19 (17750541-17750666)
               

               
               1-118, gnl|Hg17|chr19 (17750576-17750693)
               

               
               1-118, gnl|mm7|chr8 (70179485-70179387)
               

               
               1-118, gnl|monDom2|scaffold_209 (509111-509208)
               

               
               1-118, gnl|rheMac2|chr19 (17342689-17342814)
               

               
               1-118, gnl|rn3|chr16 (18908390-18908292)
               

               
               1-118, gnl|tetNig1|chr1 (15355903-15355798)
               


               
               156-589, gnl|bosTau2|chr7 (4626326-4625875)
               

               
               156-589, gnl|Hg17|chr19 (17754541-17754986)
               

               
               156-589, gnl|Mm7|chr8 (70178052-70177647)

	1-118, gnl\|bosTau2\|chr7 (4629338-4629221)
	1-118, gnl\|canFam2\|chr20 (48115444-48115319)
	1-118, gnl\|echTel1\|scaffold_294765 (2998-2873)
	1-118, gnl\|fr1\|chrUn (175426688-175426804)
	1-118, gnl\|hg17\|chr19 (17750541-17750666)
	1-118, gnl\|Hg17\|chr19 (17750576-17750693)
	1-118, gnl\|mm7\|chr8 (70179485-70179387)
	1-118, gnl\|monDom2\|scaffold_209 (509111-509208)
	1-118, gnl\|rheMac2\|chr19 (17342689-17342814)
	1-118, gnl\|rn3\|chr16 (18908390-18908292)
	1-118, gnl\|tetNig1\|chr1 (15355903-15355798)

	156-589, gnl\|bosTau2\|chr7 (4626326-4625875)
	156-589, gnl\|Hg17\|chr19 (17754541-17754986)
	156-589, gnl\|Mm7\|chr8 (70178052-70177647)