Non-Coding RNA Search

Ss1.1-Pig2-24G13.5

Sequence:


               
               GGAAGGAGCTACCCTGGGAGAGTGGGCAGGGGGACCTGGCTGTCTATGTTTCCTCAGAAA
CGACGAAGATTGTTCCTGTGGACATGCAGACAGGCTGGAACCAGAGCATCTCGTCCCTGG
AGAGCTTGGCATCCCCGCCCTGTACCCAGGCCCCAACTATGAGCCGCCTGCCTCCCTATC
CACTGGCTGCTGAAGAGCCCCGGGCCCCTCTCGACCTGCCTCCCGACCCTCGGCCTAGCT
TTGCCTTTCCCCCAAGCTTGGCCAAGGCTGGCCGCTCTCGCAGTGAAAGCAGCGCTGACA
TCCCCCGGCAACAGGAGCTGCAGCCCCTCATGGGACACGAGGACCGCACCCATCTTAGCC
CAGGCACTGCCAACTCCCACTGGTGCATCCAGTTCAGCAGAAGTGGCCGGCTGTAGCCCA
GGGACTCAGGGAGAAGCAGGGGGCCAGCACTCTCACGTGAAGTCTTCTCTGCACAACGGG
CAGAGGAGCCCACTCAGCTTGACATGGGGTTAGAGGGACCTGGAATGAAGAGGCAACTGG
GCTCCCTTGGGGAAGGTCAGAAGGGTCTCCTGAGCTGGTCCTCACAGGGACCCTTTCCAC
CACCCTCTCCACCACCCTCCCTGCTCTTAACTCTTGCTACCGTCCCTTTCGGTAAGGCCC
GTGTACTAGCACAAGACCCAGTCCAAAGCGTGTAAGGGGCTAGGCCAGAGATGTGGGTAG
CAGATGCCCTTTCCCAGTGGGTCCTCTGGGGTCATCCAGGCAGCTGTTCTTGCCCCAAAG
CAAGGGNTCATTCCTCAGCTGACAGTGGCTGCGTGC------------CTAGCACAGTTA
------------GGCAGGGGGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGAGCTACCCTGGGAGAGTGGGCAGGGGGACCTGGCTGTCTATGTTTCCTCAGAAA
CGACGAAGATTGTTCCTGTGGACATGCAGACAGGCTGGAACCAGAGCATCTCGTCCCTGG
AGAGCTTGGCATCCCCGCCCTGTACCCAGGCCCCAACTATGAGCCGCCTGCCTCCCTATC
CACTGGCTGCTGAAGAGCCCCGGGCCCCTCTCGACCTGCCTCCCGACCCTCGGCCTAGCT
TTGCCTTTCCCCCAAGCTTGGCCAAGGCTGGCCGCTCTCGCAGTGAAAGCAGCGCTGACA
TCCCCCGGCAACAGGAGCTGCAGCCCCTCATGGGACACGAGGACCGCACCCATCTTAGCC
CAGGCACTGCCAACTCCCACTGGTGCATCCAGTTCAGCAGAAGTGGCCGGCTGTAGCCCA
GGGACTCAGGGAGAAGCAGGGGGCCAGCACTCTCACGTGAAGTCTTCTCTGCACAACGGG
CAGAGGAGCCCACTCAGCTTGACATGGGGTTAGAGGGACCTGGAATGAAGAGGCAACTGG
GCTCCCTTGGGGAAGGTCAGAAGGGTCTCCTGAGCTGGTCCTCACAGGGACCCTTTCCAC
CACCCTCTCCACCACCCTCCCTGCTCTTAACTCTTGCTACCGTCCCTTTCGGTAAGGCCC
GTGTACTAGCACAAGACCCAGTCCAAAGCGTGTAAGGGGCTAGGCCAGAGATGTGGGTAG
CAGATGCCCTTTCCCAGTGGGTCCTCTGGGGTCATCCAGGCAGCTGTTCTTGCCCCAAAG
CAAGGGNTCATTCCTCAGCTGACAGTGGCTGCGTGC------------CTAGCACAGTTA
------------GGCAGGGGGCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|62750839|emb|CAI77671.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|62750839|emb|CAI77671.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               2-160, - strand, RNAz p=0.620325
               

               
               475-712, - strand, RNAz p=0.99996

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-160, - strand, RNAz p=0.620325
               

               
               475-712, - strand, RNAz p=0.99996

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-808, gnl|bosTau2|chr18 (28715347-28714553)
               

               
               2-808, gnl|Hg17|chr16 (65862200-65863000)
               

               
               2-808, gnl|Mm7|chr8 (103966703-103967445)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-808, gnl|bosTau2|chr18 (28715347-28714553)
               

               
               2-808, gnl|Hg17|chr16 (65862200-65863000)
               

               
               2-808, gnl|Mm7|chr8 (103966703-103967445)

	2-160, - strand, RNAz p=0.620325
	475-712, - strand, RNAz p=0.99996

	2-808, gnl\|bosTau2\|chr18 (28715347-28714553)
	2-808, gnl\|Hg17\|chr16 (65862200-65863000)
	2-808, gnl\|Mm7\|chr8 (103966703-103967445)