Non-Coding RNA Search

Ss1.1-Pig2-25E11.5

Sequence:


               
               GGCATGGCTAAAAAATAAATATTTAAAAAAAATAGATAGTGTATAGATTTCCTTTATGTA
ATTATTAAAAATCACTTTTAAAGCACCACTTCTAAGTTTCTTTTCATTCTCTTGCTCATA
GATATCGATGAATGCCAGCACCGTCATCTCTGCAGTAATGGGCAATGCAGAAACACAGAG
GGCTCCTTCCGCTGTGTCTGTGACCATGGTTACAGAGCGTCCGCCCTTGGAGATCACTGC
GAAGGTGAGAATTGCTCTTGGTTGCAGTCCTAAAATGCCAGAGTCAGGCTCAGGGAAATC
TGGACACTATCCTGGCCTTTGTCCCCAACCCCATACTTTTGACCTAGCAGTTGAGGACTT
TAGGTTCCTGCAAGATATCTTCCCTGTGGTCACAGAAATAATGCAGAAAAGTATGTAGAT
TCCAGGTTTTCCTTGCATTGCTCAGAGCAGTTTTTTAGAAAAATTGTGCCAGCTAACCAA
GTTAAGGATCAATTCAGGTTTTCTCAGCTGTGGATGGTTTATCCCAGTGTAGTTCTGTAT
AACATCCATTTGGATGCAGGACTGGCAATGTTCCAAGTAAGTGAAGACAAGTTGATTTTC
CAAATAACTGTAAAGTTTTTCAGAGCCAGGCTTTATTTCACTTTTGCGCTTTTTGCATAA
AATGTTTTCCATGTGGACAGCAGTATGAATCATTAACCACTTTTACTACCTGCCTTGGCT
CCGAAACCCTCTCAGGTGCTTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCATGGCTAAAAAATAAATATTTAAAAAAAATAGATAGTGTATAGATTTCCTTTATGTA
ATTATTAAAAATCACTTTTAAAGCACCACTTCTAAGTTTCTTTTCATTCTCTTGCTCATA
GATATCGATGAATGCCAGCACCGTCATCTCTGCAGTAATGGGCAATGCAGAAACACAGAG
GGCTCCTTCCGCTGTGTCTGTGACCATGGTTACAGAGCGTCCGCCCTTGGAGATCACTGC
GAAGGTGAGAATTGCTCTTGGTTGCAGTCCTAAAATGCCAGAGTCAGGCTCAGGGAAATC
TGGACACTATCCTGGCCTTTGTCCCCAACCCCATACTTTTGACCTAGCAGTTGAGGACTT
TAGGTTCCTGCAAGATATCTTCCCTGTGGTCACAGAAATAATGCAGAAAAGTATGTAGAT
TCCAGGTTTTCCTTGCATTGCTCAGAGCAGTTTTTTAGAAAAATTGTGCCAGCTAACCAA
GTTAAGGATCAATTCAGGTTTTCTCAGCTGTGGATGGTTTATCCCAGTGTAGTTCTGTAT
AACATCCATTTGGATGCAGGACTGGCAATGTTCCAAGTAAGTGAAGACAAGTTGATTTTC
CAAATAACTGTAAAGTTTTTCAGAGCCAGGCTTTATTTCACTTTTGCGCTTTTTGCATAA
AATGTTTTCCATGTGGACAGCAGTATGAATCATTAACCACTTTTACTACCTGCCTTGGCT
CCGAAACCCTCTCAGGTGCTTAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               59-175, - strand, RNAz p=0.911343
               

               
               256-373, - strand, RNAz p=0.999997

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-175, - strand, RNAz p=0.911343
               

               
               256-373, - strand, RNAz p=0.999997

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               59-738, gnl|bosTau2|chr11 (13204481-13203796)
               

               
               59-738, gnl|Hg17|chr2 (33438193-33438871)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-738, gnl|bosTau2|chr11 (13204481-13203796)
               

               
               59-738, gnl|Hg17|chr2 (33438193-33438871)

	59-175, - strand, RNAz p=0.911343
	256-373, - strand, RNAz p=0.999997

	59-738, gnl\|bosTau2\|chr11 (13204481-13203796)
	59-738, gnl\|Hg17\|chr2 (33438193-33438871)