Ss1.1-Pig2-25J20.5
|
GGTGAGATGGTCTCCGATGCTCCAGGCGTGCAGATGCAGTCTCGTGGTCTCACCTGGCCG
GCCGCAGGTGTGCAGGTGTCTGTGCAGGTGCGCCGTGCACCCGCTGGAGCCCCCAGGGGC
TCCTGTTCTCTCTGACTCAGGTGACTTTCCAGCCCTTCCCTCTCCCCTCTTTTTTTGCTC
TCCCCTCCGACTCAGCCAAGCCAGACTTGGGTGTGGGTGGTCAGCGAGGGAGGGAGCATC
CCACCACCTTCTCAGGGCAGCCCTTGACCTCCGGACACCCTTCCTCCTTCCACTCTGTGT
CTCCTCCCCGTCCACCCGCAATGCTGCAGCTGGGGCTAACCTTGCTCTCTTGTGGGGGCA
CCTCTGCCATGTCTTCCTGTGGTCGGGCCGCAGCGGATGGTGGTTCAGGCTACACACAAG
CCCCACACCCCGGCTGGGGGCTGTGTCTGCCGGGAGGGGGTGCTCCAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTGAGATGGTCTCCGATGCTCCAGGCGTGCAGATGCAGTCTCGTGGTCTCACCTGGCCG
GCCGCAGGTGTGCAGGTGTCTGTGCAGGTGCGCCGTGCACCCGCTGGAGCCCCCAGGGGC
TCCTGTTCTCTCTGACTCAGGTGACTTTCCAGCCCTTCCCTCTCCCCTCTTTTTTTGCTC
TCCCCTCCGACTCAGCCAAGCCAGACTTGGGTGTGGGTGGTCAGCGAGGGAGGGAGCATC
CCACCACCTTCTCAGGGCAGCCCTTGACCTCCGGACACCCTTCCTCCTTCCACTCTGTGT
CTCCTCCCCGTCCACCCGCAATGCTGCAGCTGGGGCTAACCTTGCTCTCTTGTGGGGGCA
CCTCTGCCATGTCTTCCTGTGGTCGGGCCGCAGCGGATGGTGGTTCAGGCTACACACAAG
CCCCACACCCCGGCTGGGGGCTGTGTCTGCCGGGAGGGGGTGCTCCAT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
139-256, + strand, RNAmicro p=0.975969 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
139-256, + strand, RNAmicro p=0.975969 |
|
5' of NM_175709, + |
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5' of NM_175709, - |
Human gene identifier and UTR site,
human gene reading direction
|
5' of NM_175709, + |
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5' of NM_175709, - |
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110-430, gnl|bosTau2|chr5 (69569775-69569446) |
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110-430, gnl|canFam2|chr10 (28961593-28960742) |
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110-430, gnl|dasNov1|scaffold_199741 (3527-2789) |
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110-430, gnl|hg17|chr22 (37852970-37853816) |
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110-430, gnl|Hg17|chr22 (37853367-37853058) |
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110-430, gnl|mm7|chr15 (80001314-80001962) |
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110-430, gnl|panTro1|chr23 (38087545-38088391) |
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110-430, gnl|rheMac2|chr10 (83036195-83037028) |
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110-430, gnl|rn3|chr7 (118184012-118184683) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
110-430, gnl|bosTau2|chr5 (69569775-69569446) |
|
110-430, gnl|canFam2|chr10 (28961593-28960742) |
|
110-430, gnl|dasNov1|scaffold_199741 (3527-2789) |
|
110-430, gnl|hg17|chr22 (37852970-37853816) |
|
110-430, gnl|Hg17|chr22 (37853367-37853058) |
|
110-430, gnl|mm7|chr15 (80001314-80001962) |
|
110-430, gnl|panTro1|chr23 (38087545-38088391) |
|
110-430, gnl|rheMac2|chr10 (83036195-83037028) |
|
110-430, gnl|rn3|chr7 (118184012-118184683) |
