Non-Coding RNA Search

Ss1.1-Pig2-26J21.5

Sequence:


               
               GGCATGGGAATCGTGCTAAGGAGCTCTTCCTATTCCTGTAGTGTTTGGCCAAGTAGGAGC
CTGAGGATACAGGGGGCACAGGGACAGAGAGAAACAAAGCCTTTCGAAGCTGAGGGGGAG
GCTGGGAGGGATGCCCAGGAGAGAGTACTCAGGAAAAGGCCCCAGAGGTAGACAAAAGGC
CGAGCAGGGCCGGCAGTGGGAGGGGGCAGATGAAGAAGGCGGAGGGACCTCAAGAGGGGG
TGGGGCGTCAGGACTGCGAGCAGATGGAGGGGATTTGCTTTGCTGAGCTGAACTCTTCAG
CCGGTAAAGGTTGGGCAGAACTTGGCGGGGGTGGTGAGCGGTTACCTTGACTGCCTCTTC
CCTGGCTCCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCATGGGAATCGTGCTAAGGAGCTCTTCCTATTCCTGTAGTGTTTGGCCAAGTAGGAGC
CTGAGGATACAGGGGGCACAGGGACAGAGAGAAACAAAGCCTTTCGAAGCTGAGGGGGAG
GCTGGGAGGGATGCCCAGGAGAGAGTACTCAGGAAAAGGCCCCAGAGGTAGACAAAAGGC
CGAGCAGGGCCGGCAGTGGGAGGGGGCAGATGAAGAAGGCGGAGGGACCTCAAGAGGGGG
TGGGGCGTCAGGACTGCGAGCAGATGGAGGGGATTTGCTTTGCTGAGCTGAACTCTTCAG
CCGGTAAAGGTTGGGCAGAACTTGGCGGGGGTGGTGAGCGGTTACCTTGACTGCCTCTTC
CCTGGCTCCATC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               255-353, - strand, RNAz p=0.510099
               

               
               257-372, - strand, RNAz p=0.935203

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-353, - strand, RNAz p=0.510099
               

               
               257-372, - strand, RNAz p=0.935203

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               20-372, gnl|bosTau2|chr5 (60463782-60463437)
               

               
               20-372, gnl|canFam2|chr27 (41298308-41297796)
               

               
               20-372, gnl|dasNov1|scaffold_291382 (756-200)
               

               
               20-372, gnl|echTel1|scaffold_300588 (2801-3350)
               

               
               20-372, gnl|hg17|chr12 (6748395-6748939)
               

               
               20-372, gnl|Hg17|chr12 (6748471-6748805)
               

               
               20-372, gnl|mm7|chr6 (124941954-124941460)
               

               
               20-372, gnl|Mm7|chr6 (124941895-124941586)
               

               
               20-372, gnl|monDom2|scaffold_31 (15186767-15187304)
               

               
               20-372, gnl|panTro1|chr10 (7285233-7285777)
               

               
               20-372, gnl|rn3|chr4 (161287985-161287513)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-372, gnl|bosTau2|chr5 (60463782-60463437)
               

               
               20-372, gnl|canFam2|chr27 (41298308-41297796)
               

               
               20-372, gnl|dasNov1|scaffold_291382 (756-200)
               

               
               20-372, gnl|echTel1|scaffold_300588 (2801-3350)
               

               
               20-372, gnl|hg17|chr12 (6748395-6748939)
               

               
               20-372, gnl|Hg17|chr12 (6748471-6748805)
               

               
               20-372, gnl|mm7|chr6 (124941954-124941460)
               

               
               20-372, gnl|Mm7|chr6 (124941895-124941586)
               

               
               20-372, gnl|monDom2|scaffold_31 (15186767-15187304)
               

               
               20-372, gnl|panTro1|chr10 (7285233-7285777)
               

               
               20-372, gnl|rn3|chr4 (161287985-161287513)

	255-353, - strand, RNAz p=0.510099
	257-372, - strand, RNAz p=0.935203

	20-372, gnl\|bosTau2\|chr5 (60463782-60463437)
	20-372, gnl\|canFam2\|chr27 (41298308-41297796)
	20-372, gnl\|dasNov1\|scaffold_291382 (756-200)
	20-372, gnl\|echTel1\|scaffold_300588 (2801-3350)
	20-372, gnl\|hg17\|chr12 (6748395-6748939)
	20-372, gnl\|Hg17\|chr12 (6748471-6748805)
	20-372, gnl\|mm7\|chr6 (124941954-124941460)
	20-372, gnl\|Mm7\|chr6 (124941895-124941586)
	20-372, gnl\|monDom2\|scaffold_31 (15186767-15187304)
	20-372, gnl\|panTro1\|chr10 (7285233-7285777)
	20-372, gnl\|rn3\|chr4 (161287985-161287513)