Non-Coding RNA Search

Ss1.1-Pig2-26M17.5

Sequence:


               
               AGAGCCTCATAGTTGCTCCTCATCACGTTAGCGTAGAGCTCCTTCTGCCAGCCCTCCAGG
TTCTCCCAGTCCTGCTCAGAGAAGCAGACCCCATCACTCTCAAGTGACCTGGACACCTTG
GGGGCCTCGCCCCTGCTGCCCGGGGGCAGCCGCAGGACCCAGAAGTTGCGGTTCCTCAGC
AGGTTCTCCATGTTCTCCAGGCGCCTCTGCAGCAGCCCGTACTCCTGCAGCAGCGTCCCC
AGCACCGCCCACTTGCCCTCCAGCTGGTTCCCGAACTCCAGGGCCGTCTTCTCGCAGTCG
GCCAGCTTCTTCTCGGCCGTGCCCGTCCGCCCCTCCAGGCTCTGCAGCCGGGCGGCCTGG
GCCTCCACCTTCTTCTCCACGGCCTGGATGGCGGCCACCACCGTCCAGAGTGAGATCTCC
GTGGCTGGCAAGTAGGAGCTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCCTCATAGTTGCTCCTCATCACGTTAGCGTAGAGCTCCTTCTGCCAGCCCTCCAGG
TTCTCCCAGTCCTGCTCAGAGAAGCAGACCCCATCACTCTCAAGTGACCTGGACACCTTG
GGGGCCTCGCCCCTGCTGCCCGGGGGCAGCCGCAGGACCCAGAAGTTGCGGTTCCTCAGC
AGGTTCTCCATGTTCTCCAGGCGCCTCTGCAGCAGCCCGTACTCCTGCAGCAGCGTCCCC
AGCACCGCCCACTTGCCCTCCAGCTGGTTCCCGAACTCCAGGGCCGTCTTCTCGCAGTCG
GCCAGCTTCTTCTCGGCCGTGCCCGTCCGCCCCTCCAGGCTCTGCAGCCGGGCGGCCTGG
GCCTCCACCTTCTTCTCCACGGCCTGGATGGCGGCCACCACCGTCCAGAGTGAGATCTCC
GTGGCTGGCAAGTAGGAGCTTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55629616|ref|XP_519466.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55629616|ref|XP_519466.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               195-314, - strand, RNAz p=0.893684

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               195-314, - strand, RNAz p=0.893684

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               115-444, gnl|bosTau2|chr4 (65399391-65399062)
               

               
               115-444, gnl|Hg17|chr7 (148385289-148384960)
               

               
               115-444, gnl|Mm7|chr6 (47885994-47885665)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-444, gnl|bosTau2|chr4 (65399391-65399062)
               

               
               115-444, gnl|Hg17|chr7 (148385289-148384960)
               

               
               115-444, gnl|Mm7|chr6 (47885994-47885665)

	115-444, gnl\|bosTau2\|chr4 (65399391-65399062)
	115-444, gnl\|Hg17\|chr7 (148385289-148384960)
	115-444, gnl\|Mm7\|chr6 (47885994-47885665)