Non-Coding RNA Search

Ss1.1-Pig2-26N21.5

Sequence:


               
               ATTGCTGCTTGC------------TCTTTAACGGTGTATTTTATTGTTTGTAGCTTCANC
CTGTGAGGNAGTNTGGCCTCCACCTGGCTCAGGAAGCCTGGATTCTGG------------
CTGCCTTGCCGTGTGACCCAGGGGAGGTNTCTTCCCTCTGAATGGGCCTTGGGCCGAATG
GCTACCTAGTGGGTTCGTTTTCTTCTTGTTATCTTGGGGTAGGNTCTTCCCCAAGCAGCA
GGAGAACCAGGGCTGATGCTCAGGGACTGTCCCCACCCCTGACCTTNATCCCTGAGGCCT
GGCTGGATGTCTTCAGTNTGGGGTACAGACAGACCTGTGTNTCCCTGTCACCCTCCTGGG
CTGGCAGGCTCCTGAGTCTGCCAGTACCTACCTACAGCTGCACCAGAGACTTCTGGAGGA
TCCTGGGTTGGTTTGCATGTGATTTGCATATTATTTGCATGCTCATGCCCACCCATACTC
AGGGCACTATGGGAAGCCCCCAGGTGACCTTGCTAAGTAGCAATAATTTGGGCCCAGAGT
CACCTGCTGCCCCTGGATACCTCTGAACCCCAGCCCAGGACCCCAGCCCAGAGGCAATAA
AGGCAGTGGTCACCAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCTGCTTGC------------TCTTTAACGGTGTATTTTATTGTTTGTAGCTTCANC
CTGTGAGGNAGTNTGGCCTCCACCTGGCTCAGGAAGCCTGGATTCTGG------------
CTGCCTTGCCGTGTGACCCAGGGGAGGTNTCTTCCCTCTGAATGGGCCTTGGGCCGAATG
GCTACCTAGTGGGTTCGTTTTCTTCTTGTTATCTTGGGGTAGGNTCTTCCCCAAGCAGCA
GGAGAACCAGGGCTGATGCTCAGGGACTGTCCCCACCCCTGACCTTNATCCCTGAGGCCT
GGCTGGATGTCTTCAGTNTGGGGTACAGACAGACCTGTGTNTCCCTGTCACCCTCCTGGG
CTGGCAGGCTCCTGAGTCTGCCAGTACCTACCTACAGCTGCACCAGAGACTTCTGGAGGA
TCCTGGGTTGGTTTGCATGTGATTTGCATATTATTTGCATGCTCATGCCCACCCATACTC
AGGGCACTATGGGAAGCCCCCAGGTGACCTTGCTAAGTAGCAATAATTTGGGCCCAGAGT
CACCTGCTGCCCCTGGATACCTCTGAACCCCAGCCCAGGACCCCAGCCCAGAGGCAATAA
AGGCAGTGGTCACCAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               157-260, - strand, RNAz p=0.965353
               

               
               412-542, + strand, RNAz p=0.984842

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-260, - strand, RNAz p=0.965353
               

               
               412-542, + strand, RNAz p=0.984842

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               188-277, + strand, RNAmicro p=0.999977

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               188-277, + strand, RNAmicro p=0.999977

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR603836, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR603836, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-554, gnl|bosTau2|chr13 (48311375-48311930)
               

               
               13-554, gnl|Hg17|chr20 (31709117-31708581)
               

               
               13-554, gnl|Mm7|chr2 (154285823-154285290)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-554, gnl|bosTau2|chr13 (48311375-48311930)
               

               
               13-554, gnl|Hg17|chr20 (31709117-31708581)
               

               
               13-554, gnl|Mm7|chr2 (154285823-154285290)

	157-260, - strand, RNAz p=0.965353
	412-542, + strand, RNAz p=0.984842

	13-554, gnl\|bosTau2\|chr13 (48311375-48311930)
	13-554, gnl\|Hg17\|chr20 (31709117-31708581)
	13-554, gnl\|Mm7\|chr2 (154285823-154285290)