Ss1.1-Pig2-27M23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAGTGCTCATGGGGCATGGAGGAGAAGGCGGCGGCCGGCGCGGGCTGCCGGGAGCCGCC GGGCCCCCCGAGGGCCGCCGCCGTCCCGTGCTTTGGCATATCCGTGGACCACAACGACAT CCTCCCCGGCGCCCTGCGCCTCATCCGGGAGCTGCGACCGCATTGGAAGCCCGAGCAAGT TCGGACCAAGGAGCTGCCTGTGGAGGAAGCAGCCGGGAATGGGCACCTGCAGCTTCTGCT GGAGTGGGAGGAGCTCCATGCTGCGCTTCACTGATGGCATCACCAACAAGCTGGTGGCCT GCTACGTGGACGAGGACATGCGGGACTGTGTGCTGGTCCGGGTGTACGGGGAGCGGACGG AGCTGCTGGTGGACCGAGAGAATGAGGTCAGGAACTTCCAGCTGCTGCGGGCACATGGCT GCGCCCCCAAACTCTACTGCACCTTCCAGAACGGGCTGTGCTACGAGTACATGCAGGGCA TGGCCCTGGGGCCTGAGCATATCCGTGAGCCCCGGCTCTTCAGGCTCATCGCCTTAGAAA TGGCAAAGATTCACACCATCCACGCCAATGGCAGCCTGCCCAAGCCCATCCTCTGGCACA AGATACACAATTATTTCACCCTTGTGAAGAATGAAATCAACCCCAGCCTTTCTGCAGATG TCCCTAAAGTGGAGGTGTTGGAACAGGAGCTGGCCTGGCTGAAGGAGCATCTGTCTCAGT TGGATTCCCCTGTGGTGTTTTGTCACAATGACCTGCTCTGCAAGAATATCATCTATGACA GCACCAAAGGTCATGTCCGATTCATTGACTATGAATATGCCGGCTACAACTACCAAGCTT TTGACATTGGCAACCATTTCAATGAGTTTGCAGGTGTGAATGAGGTCGATTACTGCCTGT ACCCGTCGCGGGAGACCCAGCTGCAGTGGCTGCGCTACTACCTGCAGGCACAGAAGGGGA TGGCTGTGACCCCCAGGGAGGTGGAGAGGCTCTACGTGCAAGTCAACAAGTTTGCCCTGG TGAGTGCGTGTGACTGGGAGGCGGAGGGGAAGGAGGAGCCAGGAGGAGGGACTCAGGGCT TACCCCCAGCTCCTACCTCCCCACAGCCCAGGGAGGAGGAAGCCCAGCCCAGGGTCAGGG GTGAGGCCCTGGAGACTCTCGTGCTATGTTCTAGAGCCCCAAACCAGAGGGGCCGTCTGG AAAGAGACATCTTGGGCCTCCGGTTAATAGTAAAATGCCCTGTTCACTGCTTTCCTCTCA TTCCATCAAGTCCAGGTTTTCTCCTTACCAGGGAACGACTTCCAAAGAGATCTCAGCTTC CTACTATCTCTCACTGAGATAAGTTCTTTCTAGTGTCTAACCTTGGCCTTTTATGCTGCA GTTAAACACCCCCCCCCCCCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAGTGCTCATGGGGCATGGAGGAGAAGGCGGCGGCCGGCGCGGGCTGCCGGGAGCCGCC GGGCCCCCCGAGGGCCGCCGCCGTCCCGTGCTTTGGCATATCCGTGGACCACAACGACAT CCTCCCCGGCGCCCTGCGCCTCATCCGGGAGCTGCGACCGCATTGGAAGCCCGAGCAAGT TCGGACCAAGGAGCTGCCTGTGGAGGAAGCAGCCGGGAATGGGCACCTGCAGCTTCTGCT GGAGTGGGAGGAGCTCCATGCTGCGCTTCACTGATGGCATCACCAACAAGCTGGTGGCCT GCTACGTGGACGAGGACATGCGGGACTGTGTGCTGGTCCGGGTGTACGGGGAGCGGACGG AGCTGCTGGTGGACCGAGAGAATGAGGTCAGGAACTTCCAGCTGCTGCGGGCACATGGCT GCGCCCCCAAACTCTACTGCACCTTCCAGAACGGGCTGTGCTACGAGTACATGCAGGGCA TGGCCCTGGGGCCTGAGCATATCCGTGAGCCCCGGCTCTTCAGGCTCATCGCCTTAGAAA TGGCAAAGATTCACACCATCCACGCCAATGGCAGCCTGCCCAAGCCCATCCTCTGGCACA AGATACACAATTATTTCACCCTTGTGAAGAATGAAATCAACCCCAGCCTTTCTGCAGATG TCCCTAAAGTGGAGGTGTTGGAACAGGAGCTGGCCTGGCTGAAGGAGCATCTGTCTCAGT TGGATTCCCCTGTGGTGTTTTGTCACAATGACCTGCTCTGCAAGAATATCATCTATGACA GCACCAAAGGTCATGTCCGATTCATTGACTATGAATATGCCGGCTACAACTACCAAGCTT TTGACATTGGCAACCATTTCAATGAGTTTGCAGGTGTGAATGAGGTCGATTACTGCCTGT ACCCGTCGCGGGAGACCCAGCTGCAGTGGCTGCGCTACTACCTGCAGGCACAGAAGGGGA TGGCTGTGACCCCCAGGGAGGTGGAGAGGCTCTACGTGCAAGTCAACAAGTTTGCCCTGG TGAGTGCGTGTGACTGGGAGGCGGAGGGGAAGGAGGAGCCAGGAGGAGGGACTCAGGGCT TACCCCCAGCTCCTACCTCCCCACAGCCCAGGGAGGAGGAAGCCCAGCCCAGGGTCAGGG GTGAGGCCCTGGAGACTCTCGTGCTATGTTCTAGAGCCCCAAACCAGAGGGGCCGTCTGG AAAGAGACATCTTGGGCCTCCGGTTAATAGTAAAATGCCCTGTTCACTGCTTTCCTCTCA TTCCATCAAGTCCAGGTTTTCTCCTTACCAGGGAACGACTTCCAAAGAGATCTCAGCTTC CTACTATCTCTCACTGAGATAAGTTCTTTCTAGTGTCTAACCTTGGCCTTTTATGCTGCA GTTAAACACCCCCCCCCCCCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1030-1145, - strand, RNAz p=0.999921 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1030-1145, - strand, RNAz p=0.999921 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 260-529, gnl|bosTau2|chr5 (50172467-50172198) | |
| 260-529, gnl|canFam2|chr27 (27618747-27618474) | |
| 260-529, gnl|danRer3|chr4 (18452090-18452361) | |
| 260-529, gnl|dasNov1|scaffold_58778 (628-902) | |
| 260-529, gnl|echTel1|scaffold_307952 (3309-3581) | |
| 260-529, gnl|fr1|chrUn (275595749-275596102) | |
| 260-529, gnl|galGal2|chr1 (63073671-63073400) | |
| 260-529, gnl|hg17|chr12 (22687955-22688229) | |
| 260-529, gnl|Hg17|chr12 (22687960-22688229) | |
| 260-529, gnl|loxAfr1|scaffold_39359 (15827-15560) | |
| 260-529, gnl|mm7|chr6 (143271397-143271671) | |
| 260-529, gnl|Mm7|chr6 (143271402-143271671) | |
| 260-529, gnl|monDom2|scaffold_31 (3431271-3431003) | |
| 260-529, gnl|oryCun1|scaffold_130786 (11779-11510) | |
| 260-529, gnl|panTro1|chrUn_random (49067037-49067311) | |
| 260-529, gnl|rheMac2|chr11 (22955501-22955775) | |
| 260-529, gnl|rn3|chr4 (181319434-181319708) | |
| 260-529, gnl|tetNig1|chrUn_random (55460405-55460140) | |
| 260-529, gnl|xenTro1|scaffold_1124 (243036-242769) | |
| 263-524, gnl|bosTau2|chr23 (16405056-16405317) | |
| 263-524, gnl|canFam2|chr38 (3740289-3740088) | |
| 263-524, gnl|danRer3|chr4 (18452066-18452259) | |
| 263-524, gnl|echTel1|scaffold_298471 (14229-14031) | |
| 263-524, gnl|fr1|chrUn (158342275-158342079) | |
| 263-524, gnl|hg17|chr1 (115735954-115736135) | |
| 263-524, gnl|Hg17|chr1 (200850748-200850487) | |
| 263-524, gnl|loxAfr1|scaffold_39359 (15859-15662) | |
| 263-524, gnl|Mm7|chr1_random (7575889-7576150) | |
| 263-524, gnl|mm7|chr3 (102119234-102119050) | |
| 263-524, gnl|monDom2|scaffold_13 (4540714-4540520) | |
| 263-524, gnl|oryCun1|scaffold_186119 (19802-19977) | |
| 263-524, gnl|panTro1|chr1 (115543218-115543399) | |
| 263-524, gnl|rheMac2|chr1 (118467618-118467799) | |
| 263-524, gnl|rn3|chr2 (197398739-197398563) | |
| 263-524, gnl|tetNig1|chrUn_random (55460419-55460242) | |
| 644-796, gnl|bosTau2|chr23 (16413036-16413188) | |
| 644-796, gnl|canFam2|chr38 (3732094-3732236) | |
| 644-796, gnl|danRer3|chr11 (40338577-40338435) | |
| 644-796, gnl|dasNov1|scaffold_9431 (81784-81926) | |
| 644-796, gnl|echTel1|scaffold_298471 (3166-3308) | |
| 644-796, gnl|fr1|chrUn (275597843-275597702) | |
| 644-796, gnl|galGal2|chrUn (28440155-28440018) | |
| 644-796, gnl|hg17|chr1 (200842092-200842234) | |
| 644-796, gnl|Hg17|chr1 (200842245-200842091) | |
| 644-796, gnl|loxAfr1|scaffold_39359 (3939-4081) | |
| 644-796, gnl|mm7|chr1 (133274207-133274065) | |
| 644-796, gnl|Mm7|chr1_random (7583446-7583595) | |
| 644-796, gnl|monDom2|scaffold_13 (4528758-4528901) | |
| 644-796, gnl|oryCun1|scaffold_185054 (8507-8649) | |
| 644-796, gnl|panTro1|chr1 (183782403-183782545) | |
| 644-796, gnl|rheMac2|chr1 (166290771-166290629) | |
| 644-796, gnl|rn3|chr13 (46302331-46302189) | |
| 644-796, gnl|tetNig1|chr11 (10491569-10491705) | |
| 871-1386, gnl|bosTau2|chr23 (16416553-16417037) | |
| 871-1386, gnl|Hg17|chr1 (200838037-200837542) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 260-529, gnl|bosTau2|chr5 (50172467-50172198) | |
| 260-529, gnl|canFam2|chr27 (27618747-27618474) | |
| 260-529, gnl|danRer3|chr4 (18452090-18452361) | |
| 260-529, gnl|dasNov1|scaffold_58778 (628-902) | |
| 260-529, gnl|echTel1|scaffold_307952 (3309-3581) | |
| 260-529, gnl|fr1|chrUn (275595749-275596102) | |
| 260-529, gnl|galGal2|chr1 (63073671-63073400) | |
| 260-529, gnl|hg17|chr12 (22687955-22688229) | |
| 260-529, gnl|Hg17|chr12 (22687960-22688229) | |
| 260-529, gnl|loxAfr1|scaffold_39359 (15827-15560) | |
| 260-529, gnl|mm7|chr6 (143271397-143271671) | |
| 260-529, gnl|Mm7|chr6 (143271402-143271671) | |
| 260-529, gnl|monDom2|scaffold_31 (3431271-3431003) | |
| 260-529, gnl|oryCun1|scaffold_130786 (11779-11510) | |
| 260-529, gnl|panTro1|chrUn_random (49067037-49067311) | |
| 260-529, gnl|rheMac2|chr11 (22955501-22955775) | |
| 260-529, gnl|rn3|chr4 (181319434-181319708) | |
| 260-529, gnl|tetNig1|chrUn_random (55460405-55460140) | |
| 260-529, gnl|xenTro1|scaffold_1124 (243036-242769) | |
| 263-524, gnl|bosTau2|chr23 (16405056-16405317) | |
| 263-524, gnl|canFam2|chr38 (3740289-3740088) | |
| 263-524, gnl|danRer3|chr4 (18452066-18452259) | |
| 263-524, gnl|echTel1|scaffold_298471 (14229-14031) | |
| 263-524, gnl|fr1|chrUn (158342275-158342079) | |
| 263-524, gnl|hg17|chr1 (115735954-115736135) | |
| 263-524, gnl|Hg17|chr1 (200850748-200850487) | |
| 263-524, gnl|loxAfr1|scaffold_39359 (15859-15662) | |
| 263-524, gnl|Mm7|chr1_random (7575889-7576150) | |
| 263-524, gnl|mm7|chr3 (102119234-102119050) | |
| 263-524, gnl|monDom2|scaffold_13 (4540714-4540520) | |
| 263-524, gnl|oryCun1|scaffold_186119 (19802-19977) | |
| 263-524, gnl|panTro1|chr1 (115543218-115543399) | |
| 263-524, gnl|rheMac2|chr1 (118467618-118467799) | |
| 263-524, gnl|rn3|chr2 (197398739-197398563) | |
| 263-524, gnl|tetNig1|chrUn_random (55460419-55460242) | |
| 644-796, gnl|bosTau2|chr23 (16413036-16413188) | |
| 644-796, gnl|canFam2|chr38 (3732094-3732236) | |
| 644-796, gnl|danRer3|chr11 (40338577-40338435) | |
| 644-796, gnl|dasNov1|scaffold_9431 (81784-81926) | |
| 644-796, gnl|echTel1|scaffold_298471 (3166-3308) | |
| 644-796, gnl|fr1|chrUn (275597843-275597702) | |
| 644-796, gnl|galGal2|chrUn (28440155-28440018) | |
| 644-796, gnl|hg17|chr1 (200842092-200842234) | |
| 644-796, gnl|Hg17|chr1 (200842245-200842091) | |
| 644-796, gnl|loxAfr1|scaffold_39359 (3939-4081) | |
| 644-796, gnl|mm7|chr1 (133274207-133274065) | |
| 644-796, gnl|Mm7|chr1_random (7583446-7583595) | |
| 644-796, gnl|monDom2|scaffold_13 (4528758-4528901) | |
| 644-796, gnl|oryCun1|scaffold_185054 (8507-8649) | |
| 644-796, gnl|panTro1|chr1 (183782403-183782545) | |
| 644-796, gnl|rheMac2|chr1 (166290771-166290629) | |
| 644-796, gnl|rn3|chr13 (46302331-46302189) | |
| 644-796, gnl|tetNig1|chr11 (10491569-10491705) | |
| 871-1386, gnl|bosTau2|chr23 (16416553-16417037) | |
| 871-1386, gnl|Hg17|chr1 (200838037-200837542) |