Non-Coding RNA Search

Ss1.1-Pig2-27M24.5

Sequence:


               
               CTCGAGCCGCCTCGAGCCGCGCCTTTTTCCTGCTCAGACCTATCTGTTTCTTTAAGCATA
AATGATAGAACTTTACAATGGAACTTCAGCACTGATTTATGTGCTAGACCCAGGTACGGA
TTGGAATATTCAGAACTTATGAAGAGAGAACAGAGCCGGAGAAGTAGTGGACTTCCCGAG
TTCTTGTGCCCTCACCTGGAAACACCAGCAAAATCCCTGAATAGGAAGGTGATCCTCTCT
GCATCCCTGTTTCTCTCCCTGGGTCCATCCTCCCCTTTTCCCTTTCCCTCTTTCAGGAAA
AGAGATAAAGTGAGTGCAAACAAGAGGAGGATGTGATGTTACAAGAGTTGTCTTTCAGGA
ATTGCCAACCCGTGTTCAGAGTAATTCTTGTACCTCCTAAGAAGATTGGTTTATTTCTAT
GCCAAACAGCTGCTTTACTCAAAATAGAGTGGCAGACCCATAATAATCTCTCAGATCATA
TTTTTTGAACAAGTAACCTACCCCCTTTGCATCCTCCCTCTGACCTGTTCATTGAAGCAG
CATAATTTTTACTGAGAGCATTCACCCGAACCTTTGTTTTTAGGTGTGTGATAAAGTAGT
TGTGGTGGTGTGGATGTATGGGGTGAAGTCTGCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGAGCCGCCTCGAGCCGCGCCTTTTTCCTGCTCAGACCTATCTGTTTCTTTAAGCATA
AATGATAGAACTTTACAATGGAACTTCAGCACTGATTTATGTGCTAGACCCAGGTACGGA
TTGGAATATTCAGAACTTATGAAGAGAGAACAGAGCCGGAGAAGTAGTGGACTTCCCGAG
TTCTTGTGCCCTCACCTGGAAACACCAGCAAAATCCCTGAATAGGAAGGTGATCCTCTCT
GCATCCCTGTTTCTCTCCCTGGGTCCATCCTCCCCTTTTCCCTTTCCCTCTTTCAGGAAA
AGAGATAAAGTGAGTGCAAACAAGAGGAGGATGTGATGTTACAAGAGTTGTCTTTCAGGA
ATTGCCAACCCGTGTTCAGAGTAATTCTTGTACCTCCTAAGAAGATTGGTTTATTTCTAT
GCCAAACAGCTGCTTTACTCAAAATAGAGTGGCAGACCCATAATAATCTCTCAGATCATA
TTTTTTGAACAAGTAACCTACCCCCTTTGCATCCTCCCTCTGACCTGTTCATTGAAGCAG
CATAATTTTTACTGAGAGCATTCACCCGAACCTTTGTTTTTAGGTGTGTGATAAAGTAGT
TGTGGTGGTGTGGATGTATGGGGTGAAGTCTGCATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               249-355, - strand, RNAz p=0.636168

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-355, - strand, RNAz p=0.636168

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               21-636, gnl|bosTau2|chr6 (7692100-7692668)
               

               
               21-636, gnl|Hg17|chr4 (111889422-111888723)
               

               
               21-636, gnl|Mm7|chr3 (129065907-129066563)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-636, gnl|bosTau2|chr6 (7692100-7692668)
               

               
               21-636, gnl|Hg17|chr4 (111889422-111888723)
               

               
               21-636, gnl|Mm7|chr3 (129065907-129066563)

	21-636, gnl\|bosTau2\|chr6 (7692100-7692668)
	21-636, gnl\|Hg17\|chr4 (111889422-111888723)
	21-636, gnl\|Mm7\|chr3 (129065907-129066563)