Non-Coding RNA Search

Ss1.1-Pig2-28E10.5

Sequence:


               
               GCAGAGGGCTACGGGAGAAGCCAGAGGTTGGGACCTCCATGATGGGCAGTGGTCTGAACC
CTTATATGGATTTCCCACCTGCTGATACTCTGGGATACGGGGGACCTGAGGGGGCAGCAA
CTGAGCCTTACGGAGTTAGAGGCCCGGGCTCCCTGCCTCTTGGGCCTGGTCCACCCACCA
ACTATGGCCCCAACCCTTGCCCTCAGCAGGTCGCCTATCCTGAACCCACCCCAGAAACAT
GGGGTGAATTCCCTTCCCACTCTGGACTGTACCCAGGCCCCAAGGCGCCTGCTGGAACCT
ACAGCCAGTGTCCTCGTCTTGAACACTATGGACAAGTGCAGGTGAAGCCAGAACAGGGGT
GTCCAGTGGGTTCTGACTCCACAGGACTGGCACCCTGCCTCAATGCCCACCCCAATGAGG
GGCCTACCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAGGGCTACGGGAGAAGCCAGAGGTTGGGACCTCCATGATGGGCAGTGGTCTGAACC
CTTATATGGATTTCCCACCTGCTGATACTCTGGGATACGGGGGACCTGAGGGGGCAGCAA
CTGAGCCTTACGGAGTTAGAGGCCCGGGCTCCCTGCCTCTTGGGCCTGGTCCACCCACCA
ACTATGGCCCCAACCCTTGCCCTCAGCAGGTCGCCTATCCTGAACCCACCCCAGAAACAT
GGGGTGAATTCCCTTCCCACTCTGGACTGTACCCAGGCCCCAAGGCGCCTGCTGGAACCT
ACAGCCAGTGTCCTCGTCTTGAACACTATGGACAAGTGCAGGTGAAGCCAGAACAGGGGT
GTCCAGTGGGTTCTGACTCCACAGGACTGGCACCCTGCCTCAATGCCCACCCCAATGAGG
GGCCTACCTGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-431, - strand, RNAz p=0.995347

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-431, - strand, RNAz p=0.995347

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               41-228, - strand, RNAmicro p=0.990891

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               41-228, - strand, RNAmicro p=0.990891

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               226-409, 7k01c02.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb|BG150447.1|), 
blast E-value=0, identity=91.85% 
               

               
               148-424, 602860990F1 NIH_MGC_17 Homo sapiens cDNA clone IMAGE (gb|BI113784.1|), 
blast E-value=0, identity=92.06% 
               

               
               121-425, 527736 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM287365.1|), 
blast E-value=0, identity=92.13% 
               

               
               121-422, AGENCOURT_8485452 NIH_MGC_99 Homo sapiens cDNA clone IMAGE 
(gb|BQ642167.1|), blast E-value=0, identity=90.4% 
               

               
               121-425, AGENCOURT_15656983 NIH_MGC_218 Homo sapiens cDNA clone 
(gb|CF618831.1|), blast E-value=0, identity=89.18% 
               

               
               147-424, 17000599999697 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN290015.1|), blast E-value=0, identity=92.09%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               226-409, 7k01c02.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb|BG150447.1|), 
blast E-value=0, identity=91.85% 
               

               
               148-424, 602860990F1 NIH_MGC_17 Homo sapiens cDNA clone IMAGE (gb|BI113784.1|), 
blast E-value=0, identity=92.06% 
               

               
               121-425, 527736 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM287365.1|), 
blast E-value=0, identity=92.13% 
               

               
               121-422, AGENCOURT_8485452 NIH_MGC_99 Homo sapiens cDNA clone IMAGE 
(gb|BQ642167.1|), blast E-value=0, identity=90.4% 
               

               
               121-425, AGENCOURT_15656983 NIH_MGC_218 Homo sapiens cDNA clone 
(gb|CF618831.1|), blast E-value=0, identity=89.18% 
               

               
               147-424, 17000599999697 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN290015.1|), blast E-value=0, identity=92.09%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-431, gnl|bosTau2|chr5 (34810719-34810290)
               

               
               2-431, gnl|Hg17|chr12 (56150890-56151319)
               

               
               2-431, gnl|Mm7|chr10 (126832676-126832247)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-431, gnl|bosTau2|chr5 (34810719-34810290)
               

               
               2-431, gnl|Hg17|chr12 (56150890-56151319)
               

               
               2-431, gnl|Mm7|chr10 (126832676-126832247)

	226-409, 7k01c02.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb\|BG150447.1\|), blast E-value=0, identity=91.85%
	148-424, 602860990F1 NIH_MGC_17 Homo sapiens cDNA clone IMAGE (gb\|BI113784.1\|), blast E-value=0, identity=92.06%
	121-425, 527736 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM287365.1\|), blast E-value=0, identity=92.13%
	121-422, AGENCOURT_8485452 NIH_MGC_99 Homo sapiens cDNA clone IMAGE (gb\|BQ642167.1\|), blast E-value=0, identity=90.4%
	121-425, AGENCOURT_15656983 NIH_MGC_218 Homo sapiens cDNA clone (gb\|CF618831.1\|), blast E-value=0, identity=89.18%
	147-424, 17000599999697 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence (gb\|CN290015.1\|), blast E-value=0, identity=92.09%

	2-431, gnl\|bosTau2\|chr5 (34810719-34810290)
	2-431, gnl\|Hg17\|chr12 (56150890-56151319)
	2-431, gnl\|Mm7\|chr10 (126832676-126832247)