Non-Coding RNA Search

Ss1.1-Pig2-28G03.5

Sequence:


               
               GGCGAGGTCCAGCGCCTGCAAGAGCAGGAGAGGATGCTGCACGACCTGCGGGAGCAGAAC
AGCCGCCTGCAGCTTCAGAAGAGGCCAGTGCAGGCCTTTCAAAAGAAGCACACGCACACC
ACTGAGGGCCAGAAAAAGGTCCAGGAGACCAATCTTAGCTCTCTAGTTAATTACCAGGCC
CGCAAGGTCCTCATGGACTGCCAGGCCAAGGCTGAGGAGCTCCTCCGGAAGCTGTCCCTT
GAACAGAGTTTTCAGTGGTCCCAAGAGATCCCCCAGGGCGTGATTAAAGCGTATCACCGA
GAGCCCAAGGAGAAGGTCCAGAAGGAGGACGCACAGTTCCAGCAGGTCAAATGGCGCCCG
GGGGAGTCCGAGGAGCAGAGGAAGGAGCACAAGCGGCTGCTTGTGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGAGGTCCAGCGCCTGCAAGAGCAGGAGAGGATGCTGCACGACCTGCGGGAGCAGAAC
AGCCGCCTGCAGCTTCAGAAGAGGCCAGTGCAGGCCTTTCAAAAGAAGCACACGCACACC
ACTGAGGGCCAGAAAAAGGTCCAGGAGACCAATCTTAGCTCTCTAGTTAATTACCAGGCC
CGCAAGGTCCTCATGGACTGCCAGGCCAAGGCTGAGGAGCTCCTCCGGAAGCTGTCCCTT
GAACAGAGTTTTCAGTGGTCCCAAGAGATCCCCCAGGGCGTGATTAAAGCGTATCACCGA
GAGCCCAAGGAGAAGGTCCAGAAGGAGGACGCACAGTTCCAGCAGGTCAAATGGCGCCCG
GGGGAGTCCGAGGAGCAGAGGAAGGAGCACAAGCGGCTGCTTGTGGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               147-264, - strand, RNAz p=0.689322

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-264, - strand, RNAz p=0.689322

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               28-408, gnl|bosTau2|chr16 (16020794-16020417)
               

               
               28-408, gnl|Hg17|chr1 (219939743-219940120)
               

               
               28-408, gnl|Mm7|chr1 (182734996-182734607)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-408, gnl|bosTau2|chr16 (16020794-16020417)
               

               
               28-408, gnl|Hg17|chr1 (219939743-219940120)
               

               
               28-408, gnl|Mm7|chr1 (182734996-182734607)

	28-408, gnl\|bosTau2\|chr16 (16020794-16020417)
	28-408, gnl\|Hg17\|chr1 (219939743-219940120)
	28-408, gnl\|Mm7\|chr1 (182734996-182734607)