Non-Coding RNA Search

Ss1.1-Pig2-29P20.5

Sequence:


               
               ATTAGCGTCCCGGCCCCCCGGGTGCCGGCTCTCCGCACTTAGCACTTGGGAATTCGGATT
CTCTTTTCTAGGGAAAGCTTCTCCCTCTTCACCCTCGGCTTTCCCCGCAGGTGAGGCCTC
CATGGAGCGGTTCCTGGCCCAGCTGTGCGGTACCAGCGCGCTGCAGCCGCTCCCAGTGTG
GGAGGGGGACACCACCGGCCACTGCTTCACCCAGCTGGTGCTCAGCGCCCTGCCCCACGC
GCTCCTCGCCGTGCTCAGTGCCTGCCACTGGGGCAACCCGAGGTGGGTAGAGAGGGATGC
AAGACACCCGTCCATGTGTGCCTGCAGACCTCGCTCGAAACCCACGTTTCCGCGGCAGTG
TAACCGAAATATGTCTGTGGGGTAGGGGCAAAAGAAGAATAAAATTTGGGCATCACCACT
TTGCCACTCTGTTTTGGGTCAAGTTAACTATCTTCCCTGAGCCTCATAGCACTGTTGGAA
GATTTAAATTACATAATGCGTTTAAGCATACAGTGCAGTGCCTGGCACATTTTTAAAGTC
CCAATGCCATGTAGAAATCATGACTTCTGTAGATCTTCAGATGCCCAAACACAGTTGTCA
TGAATTGGAGGCAAAAGTGGGTGAGCAGTGTTTTGAAGCCAAAAAGATTAACATGTTCTG
AAGTTGTTGGACCAGTTCCTTACCACTTCCGTCTACGAAACCTCATTGTTTCTAGGCTAA
GAAAAGTATATGTATTCAAGTGGAAAAGATGTAATGGGTAGAAGAGAAGAGCAAAATCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAGCGTCCCGGCCCCCCGGGTGCCGGCTCTCCGCACTTAGCACTTGGGAATTCGGATT
CTCTTTTCTAGGGAAAGCTTCTCCCTCTTCACCCTCGGCTTTCCCCGCAGGTGAGGCCTC
CATGGAGCGGTTCCTGGCCCAGCTGTGCGGTACCAGCGCGCTGCAGCCGCTCCCAGTGTG
GGAGGGGGACACCACCGGCCACTGCTTCACCCAGCTGGTGCTCAGCGCCCTGCCCCACGC
GCTCCTCGCCGTGCTCAGTGCCTGCCACTGGGGCAACCCGAGGTGGGTAGAGAGGGATGC
AAGACACCCGTCCATGTGTGCCTGCAGACCTCGCTCGAAACCCACGTTTCCGCGGCAGTG
TAACCGAAATATGTCTGTGGGGTAGGGGCAAAAGAAGAATAAAATTTGGGCATCACCACT
TTGCCACTCTGTTTTGGGTCAAGTTAACTATCTTCCCTGAGCCTCATAGCACTGTTGGAA
GATTTAAATTACATAATGCGTTTAAGCATACAGTGCAGTGCCTGGCACATTTTTAAAGTC
CCAATGCCATGTAGAAATCATGACTTCTGTAGATCTTCAGATGCCCAAACACAGTTGTCA
TGAATTGGAGGCAAAAGTGGGTGAGCAGTGTTTTGAAGCCAAAAAGATTAACATGTTCTG
AAGTTGTTGGACCAGTTCCTTACCACTTCCGTCTACGAAACCTCATTGTTTCTAGGCTAA
GAAAAGTATATGTATTCAAGTGGAAAAGATGTAATGGGTAGAAGAGAAGAGCAAAATCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               5-120, - strand, RNAz p=0.923584

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-120, - strand, RNAz p=0.923584

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-780, gnl|bosTau2|chr23 (17255493-17256274)
               

               
               5-780, gnl|Hg17|chr6 (43503626-43504353)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-780, gnl|bosTau2|chr23 (17255493-17256274)
               

               
               5-780, gnl|Hg17|chr6 (43503626-43504353)

	5-780, gnl\|bosTau2\|chr23 (17255493-17256274)
	5-780, gnl\|Hg17\|chr6 (43503626-43504353)