Non-Coding RNA Search

Ss1.1-Pig2-31E03.5

Sequence:


               
               CTGCCTAGGTGGAGTTACCAGGATGACGGTGTCGTTGGTGGTTATCATGTTTGAGCTGAC
GGGTGGCCTGGAGTACATCGTGCCTCTGATGGCGGCGGCCGTGACCAGCAAGTGGGTGGC
CGATGCCTTTGGGAAGGAAGGCATCTACGAGGCCCACATCCACTTAAATGGGTACCCGTT
CCTGGACGTGAAGGACGAGTTCACCCACCGCACGCTGGCCACCGACGTCATGCGGCCCCG
GCGCGGGGAGCCGCCGCTGTCGGTGCTCACGCAGGACAGCATGACCGTCGAGGACGTGGA
GACGCTCATCAAGGAGACTGACTACAACGGCTTCCCCGTCGTCGTCTCCAGGGACTCGGA
GCGCCTCATCGGCTTCGCCCAGAGGCGGGAGCTGATTCTGGCAATAAAGAACGCCAGACA
GAGGCAGGAGGGCATCGTCAGCGACTCCGTCATGTACTTCACGGAGGAGCCCCCCGAGCT
GCCGGCCAACAGCCCACACCCGCTGAAGCTGCGGCGCGTCCTGAACCTCAGCCCTTTCAC
GGTCACGGACCACACGCCCATGGAGACGGTGGTGGACATCTTCCGGAAGCTGGGGCTCCG
CCAGTGCCTGGTGACGCGGAGCGGGAGACTTCTTGGCATCATCACAAAAAAGGATGTTCT
GAGACATATGGCCCAGATGGCAAACCAGGACACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCTAGGTGGAGTTACCAGGATGACGGTGTCGTTGGTGGTTATCATGTTTGAGCTGAC
GGGTGGCCTGGAGTACATCGTGCCTCTGATGGCGGCGGCCGTGACCAGCAAGTGGGTGGC
CGATGCCTTTGGGAAGGAAGGCATCTACGAGGCCCACATCCACTTAAATGGGTACCCGTT
CCTGGACGTGAAGGACGAGTTCACCCACCGCACGCTGGCCACCGACGTCATGCGGCCCCG
GCGCGGGGAGCCGCCGCTGTCGGTGCTCACGCAGGACAGCATGACCGTCGAGGACGTGGA
GACGCTCATCAAGGAGACTGACTACAACGGCTTCCCCGTCGTCGTCTCCAGGGACTCGGA
GCGCCTCATCGGCTTCGCCCAGAGGCGGGAGCTGATTCTGGCAATAAAGAACGCCAGACA
GAGGCAGGAGGGCATCGTCAGCGACTCCGTCATGTACTTCACGGAGGAGCCCCCCGAGCT
GCCGGCCAACAGCCCACACCCGCTGAAGCTGCGGCGCGTCCTGAACCTCAGCCCTTTCAC
GGTCACGGACCACACGCCCATGGAGACGGTGGTGGACATCTTCCGGAAGCTGGGGCTCCG
CCAGTGCCTGGTGACGCGGAGCGGGAGACTTCTTGGCATCATCACAAAAAAGGATGTTCT
GAGACATATGGCCCAGATGGCAAACCAGGACACAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|577053|emb|CAA57430.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|577053|emb|CAA57430.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               86-205, - strand, RNAz p=0.772086
               

               
               290-407, - strand, RNAz p=0.633313

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-205, - strand, RNAz p=0.772086
               

               
               290-407, - strand, RNAz p=0.633313

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-407, gnl|bosTau2|chrX (41219809-41219409)
               

               
               7-407, gnl|Hg17|chrX (9991455-9991855)
               

               
               7-407, gnl|Mm7|chr7_random (7850-8250)
               


               
               408-628, gnl|bosTau2|chrX (41212800-41212580)
               

               
               408-628, gnl|Hg17|chrX (9998437-9998657)
               

               
               408-628, gnl|Mm7|chr7_random (9263-9483)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-407, gnl|bosTau2|chrX (41219809-41219409)
               

               
               7-407, gnl|Hg17|chrX (9991455-9991855)
               

               
               7-407, gnl|Mm7|chr7_random (7850-8250)
               


               
               408-628, gnl|bosTau2|chrX (41212800-41212580)
               

               
               408-628, gnl|Hg17|chrX (9998437-9998657)
               

               
               408-628, gnl|Mm7|chr7_random (9263-9483)

	86-205, - strand, RNAz p=0.772086
	290-407, - strand, RNAz p=0.633313

	7-407, gnl\|bosTau2\|chrX (41219809-41219409)
	7-407, gnl\|Hg17\|chrX (9991455-9991855)
	7-407, gnl\|Mm7\|chr7_random (7850-8250)

	408-628, gnl\|bosTau2\|chrX (41212800-41212580)
	408-628, gnl\|Hg17\|chrX (9998437-9998657)
	408-628, gnl\|Mm7\|chr7_random (9263-9483)