Non-Coding RNA Search

Ss1.1-Pig2-32F18.5

Sequence:


               
               CCCCTCACCCCCATGCTTCATTCCCGCAGAGTAATGCTGTGGCTTCTCGCAGCTTGAACC
TGCAAAGTTTCCCAGGTGGTTCTAGGTGTTTTCAAGGTTACAGGAGTGACCTCAGGCTCA
GCAGGGCCCCGTCTCCTATGACCCACCCTAGCTTGATCAACGGTGTCCCCAGGCTGTCAC
AAACAAGGGGTTGTGGGCCGTCACGTGGCCCTGAGTAACCACACTCTTGCTTCCTTCTTT
TATACACGGCCATTGAGGGTTGGTGCCGTCAGAGACAACGGCAGGGGTGCCACGGCAGTG
CACAGGCTGGGTCCTTGTCGCTAAAGCAGGGAAGACACTTCTGGGCCCACGAGACAGCTG
TCCCATGCTCTACTGAGCACGGTACCATGTTTCTGCAACTCCTTCTGCTGCTGACCCTGC
TGGGCCCTGGAAGCAGCCTCTGGCCATGGGACACCTGGGAGGATGGAGCCAAGGAGGCCC
TAGGTCTCCTACTCACCCGCGGCCGGAGACAGGTAAATGGGAATGAATTTGACGAGTATG
AATATGATCATCCGTACACAGACCCTCCAGAAAATTTGCAAAATCACACTGAGCCCATGT
CCTCGAGACCTCAGCTTCTGGCTTCGTTGGGAACATTTGGGCAGAGAGATACTGCAGGGA
CTGCAACACCTGAGCCAGTCACTCTGGAGATGGCCACAAGGGACTCTACTGTCCTGGATG
CAGGAGGGGCGGCCACTGGGAATCCGAGCATGAAACTGGCCACACAGGGAATTTCTGTCA
CACTGGACCCTCTGACCAAAGAACCAGTCACTGTAATCCTCAAAGAGGATACAATCACAG
AGTCGGCTACAGCAGAGGCCCTGTCCATGGGGCCAGCAGGCATAGAAGCAGCGTCCACAG
AACCCGTGTCCACAGAGGCCACGCCTACAGAACCCGTGTCCACAGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTCACCCCCATGCTTCATTCCCGCAGAGTAATGCTGTGGCTTCTCGCAGCTTGAACC
TGCAAAGTTTCCCAGGTGGTTCTAGGTGTTTTCAAGGTTACAGGAGTGACCTCAGGCTCA
GCAGGGCCCCGTCTCCTATGACCCACCCTAGCTTGATCAACGGTGTCCCCAGGCTGTCAC
AAACAAGGGGTTGTGGGCCGTCACGTGGCCCTGAGTAACCACACTCTTGCTTCCTTCTTT
TATACACGGCCATTGAGGGTTGGTGCCGTCAGAGACAACGGCAGGGGTGCCACGGCAGTG
CACAGGCTGGGTCCTTGTCGCTAAAGCAGGGAAGACACTTCTGGGCCCACGAGACAGCTG
TCCCATGCTCTACTGAGCACGGTACCATGTTTCTGCAACTCCTTCTGCTGCTGACCCTGC
TGGGCCCTGGAAGCAGCCTCTGGCCATGGGACACCTGGGAGGATGGAGCCAAGGAGGCCC
TAGGTCTCCTACTCACCCGCGGCCGGAGACAGGTAAATGGGAATGAATTTGACGAGTATG
AATATGATCATCCGTACACAGACCCTCCAGAAAATTTGCAAAATCACACTGAGCCCATGT
CCTCGAGACCTCAGCTTCTGGCTTCGTTGGGAACATTTGGGCAGAGAGATACTGCAGGGA
CTGCAACACCTGAGCCAGTCACTCTGGAGATGGCCACAAGGGACTCTACTGTCCTGGATG
CAGGAGGGGCGGCCACTGGGAATCCGAGCATGAAACTGGCCACACAGGGAATTTCTGTCA
CACTGGACCCTCTGACCAAAGAACCAGTCACTGTAATCCTCAAAGAGGATACAATCACAG
AGTCGGCTACAGCAGAGGCCCTGTCCATGGGGCCAGCAGGCATAGAAGCAGCGTCCACAG
AACCCGTGTCCACAGAGGCCACGCCTACAGAACCCGTGTCCACAGAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               126-292, - strand, RNAz p=0.62466

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-292, - strand, RNAz p=0.62466

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_003006, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003006, -

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               69-384, gnl|bosTau2|chr17 (34952615-34952285)
               

               
               69-384, gnl|canFam2|chr26 (21276299-21275851)
               

               
               69-384, gnl|dasNov1|scaffold_62099 (8702-9165)
               

               
               69-384, gnl|hg17|chr12 (107529797-107530283)
               

               
               69-384, gnl|Hg17|chr12 (107530315-107529979)
               

               
               69-384, gnl|loxAfr1|scaffold_4990 (79347-78823)
               

               
               69-384, gnl|mm7|chr5 (113052065-113052478)
               

               
               69-384, gnl|Mm7|chr5 (113052532-113052197)
               

               
               69-384, gnl|panTro1|chr10 (110085813-110086300)
               

               
               69-384, gnl|rheMac2|chr11 (109644052-109644538)
               

               
               69-384, gnl|rn3|chr12 (43696112-43695702)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-384, gnl|bosTau2|chr17 (34952615-34952285)
               

               
               69-384, gnl|canFam2|chr26 (21276299-21275851)
               

               
               69-384, gnl|dasNov1|scaffold_62099 (8702-9165)
               

               
               69-384, gnl|hg17|chr12 (107529797-107530283)
               

               
               69-384, gnl|Hg17|chr12 (107530315-107529979)
               

               
               69-384, gnl|loxAfr1|scaffold_4990 (79347-78823)
               

               
               69-384, gnl|mm7|chr5 (113052065-113052478)
               

               
               69-384, gnl|Mm7|chr5 (113052532-113052197)
               

               
               69-384, gnl|panTro1|chr10 (110085813-110086300)
               

               
               69-384, gnl|rheMac2|chr11 (109644052-109644538)
               

               
               69-384, gnl|rn3|chr12 (43696112-43695702)

	69-384, gnl\|bosTau2\|chr17 (34952615-34952285)
	69-384, gnl\|canFam2\|chr26 (21276299-21275851)
	69-384, gnl\|dasNov1\|scaffold_62099 (8702-9165)
	69-384, gnl\|hg17\|chr12 (107529797-107530283)
	69-384, gnl\|Hg17\|chr12 (107530315-107529979)
	69-384, gnl\|loxAfr1\|scaffold_4990 (79347-78823)
	69-384, gnl\|mm7\|chr5 (113052065-113052478)
	69-384, gnl\|Mm7\|chr5 (113052532-113052197)
	69-384, gnl\|panTro1\|chr10 (110085813-110086300)
	69-384, gnl\|rheMac2\|chr11 (109644052-109644538)
	69-384, gnl\|rn3\|chr12 (43696112-43695702)