Non-Coding RNA Search

Ss1.1-Pig2-34L03.5

Sequence:


               
               CAGTACATTTCTCAGTCTCCTGCTGTTTCACACTCTCCTGTTACTGTGAGAGATCTTTCA
GAAGTCCAAGGCTTAGCCTAGCTGCCATGAAACCTTTTCAGGCTGTTTGCTCCAGAGAAA
TACAGGACAGAGCTTGGTGGATACCAGTGGGCAATGCTTTTTTTTTTTCCCCCTGAAAGT
GTATTTCAAAGTCAGTGAACACAGTCAGTCTATAATGTAACCTGAAATCATCACCATTTT
TTCTTCCCTTTTAAAATTCTGTGCTATAAGAGATGAATTCAGAAGAAGACATGCTGCCAT
TTCCAGTGTGAAAGTTAAATGGGCAGAAGGAAGTTTTCTGTATGATCTTTAGGGTACCCA
CATAGGGCTCTGTAAACCCCACTTGATGATGACGTTGCCTAGGGTTATACACCACATTAA
TTCCTCTAGGGTTAACGTTATGATACCTTCCTTAAAATGTTAGGTACCTTCAGAAGGAAC
TGGATACCGTGTGTGTTGGTAATCTACAAGAAGATACCTCCAGGAGTGCATGGTTTGTGA
AGATTATGTTGAGTAATATCAGCTGAGAAGTTCCCTTGGAAAGAGTGAAGCTGATACTGC
ATGTACCTCTGACCTAATTAGTCTCTTGGCCGGGCTCTTTAGGCTGAGGCAACACAGAGT
CTTATAACATGACCGATTCAGGTTAGATCATTGGTGCGGTAAACTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTACATTTCTCAGTCTCCTGCTGTTTCACACTCTCCTGTTACTGTGAGAGATCTTTCA
GAAGTCCAAGGCTTAGCCTAGCTGCCATGAAACCTTTTCAGGCTGTTTGCTCCAGAGAAA
TACAGGACAGAGCTTGGTGGATACCAGTGGGCAATGCTTTTTTTTTTTCCCCCTGAAAGT
GTATTTCAAAGTCAGTGAACACAGTCAGTCTATAATGTAACCTGAAATCATCACCATTTT
TTCTTCCCTTTTAAAATTCTGTGCTATAAGAGATGAATTCAGAAGAAGACATGCTGCCAT
TTCCAGTGTGAAAGTTAAATGGGCAGAAGGAAGTTTTCTGTATGATCTTTAGGGTACCCA
CATAGGGCTCTGTAAACCCCACTTGATGATGACGTTGCCTAGGGTTATACACCACATTAA
TTCCTCTAGGGTTAACGTTATGATACCTTCCTTAAAATGTTAGGTACCTTCAGAAGGAAC
TGGATACCGTGTGTGTTGGTAATCTACAAGAAGATACCTCCAGGAGTGCATGGTTTGTGA
AGATTATGTTGAGTAATATCAGCTGAGAAGTTCCCTTGGAAAGAGTGAAGCTGATACTGC
ATGTACCTCTGACCTAATTAGTCTCTTGGCCGGGCTCTTTAGGCTGAGGCAACACAGAGT
CTTATAACATGACCGATTCAGGTTAGATCATTGGTGCGGTAAACTTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               593-707, - strand, RNAz p=0.962594

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               593-707, - strand, RNAz p=0.962594

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-707, gnl|bosTau2|chr13 (46931950-46932651)
               

               
               1-707, gnl|Hg17|chr20 (30902360-30903331)
               

               
               1-707, gnl|Mm7|chr2 (153509750-153510505)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-707, gnl|bosTau2|chr13 (46931950-46932651)
               

               
               1-707, gnl|Hg17|chr20 (30902360-30903331)
               

               
               1-707, gnl|Mm7|chr2 (153509750-153510505)

	1-707, gnl\|bosTau2\|chr13 (46931950-46932651)
	1-707, gnl\|Hg17\|chr20 (30902360-30903331)
	1-707, gnl\|Mm7\|chr2 (153509750-153510505)