Non-Coding RNA Search

Ss1.1-Pig2-35P15.5

Sequence:


               
               GCCCTCGGAATGCCCAGCCACCCTTGGTGGCTAACCCCACCACCACGTGTCCTGTCTTGG
CACCTTTTGGTGCGTCAGGCACTGGAAAGCCCATGCCAAGCCCTTATTTGGAAATGTCAG
AAAGGAAAGTACTTAACGCTCCGAAAGCCAACACAGGACTAAATGTATTCTCCTCTGACC
TGTCTTGTTTCCCTTCCGGCTGTGAAAATCCACGGGAAAGGAAAGCCTTGTTCAGTTACA
GCACCACTGATGCGCTTTCCACCCCAGTGCTGCATAAGGCTGCTAGTAAAACAGAAGATA
ATGGCCAAAGGGAGGAGGGCAGCCTGCCTGCCTTTAGAACTGCCAGAGAGCAGTTATGGG
TAGATCAGCAGAAGAAGGCCCAGCAGCCCCAGCGCGCGCCAGGGCCTTTGTATGGTGGTG
TGAAAAAGTCTCTGGGAGCTGGTAGATCCCGAGGCATATTTGGGAAGTTTGTGCCCCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCTCGGAATGCCCAGCCACCCTTGGTGGCTAACCCCACCACCACGTGTCCTGTCTTGG
CACCTTTTGGTGCGTCAGGCACTGGAAAGCCCATGCCAAGCCCTTATTTGGAAATGTCAG
AAAGGAAAGTACTTAACGCTCCGAAAGCCAACACAGGACTAAATGTATTCTCCTCTGACC
TGTCTTGTTTCCCTTCCGGCTGTGAAAATCCACGGGAAAGGAAAGCCTTGTTCAGTTACA
GCACCACTGATGCGCTTTCCACCCCAGTGCTGCATAAGGCTGCTAGTAAAACAGAAGATA
ATGGCCAAAGGGAGGAGGGCAGCCTGCCTGCCTTTAGAACTGCCAGAGAGCAGTTATGGG
TAGATCAGCAGAAGAAGGCCCAGCAGCCCCAGCGCGCGCCAGGGCCTTTGTATGGTGGTG
TGAAAAAGTCTCTGGGAGCTGGTAGATCCCGAGGCATATTTGGGAAGTTTGTGCCCCCGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               274-393, - strand, RNAz p=0.889047

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-393, - strand, RNAz p=0.889047

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-478, gnl|bosTau2|chr4 (110525-110045)
               

               
               1-478, gnl|Hg17|chr7 (50288644-50288167)
               

               
               1-478, gnl|Mm7|chr11 (11754491-11754007)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-478, gnl|bosTau2|chr4 (110525-110045)
               

               
               1-478, gnl|Hg17|chr7 (50288644-50288167)
               

               
               1-478, gnl|Mm7|chr11 (11754491-11754007)

	1-478, gnl\|bosTau2\|chr4 (110525-110045)
	1-478, gnl\|Hg17\|chr7 (50288644-50288167)
	1-478, gnl\|Mm7\|chr11 (11754491-11754007)