Non-Coding RNA Search

Ss1.1-Pig2-37P24.5

Sequence:


               
               GCTTACGCCGAGCATCCACGAGCAAGAGCCGGAAGGAGAAGGGCAGCAATCGCCTGTCCA
TGGGCAGCAGGGAGTCGGTGGAGGGCTCCAGCAGGTCGGGGGGCTCGCCGTTCCTGCCCT
TTTCCTGGTTCACAGACAGTGGCAAGGCCTCCGCGTCCTCCGGCAGCACCACCTCCCCAG
GCTGTTCCCCCAAACATGAGGGCTTCAGCCCTAAAAAGTCAGCTTCTCAGGAATCCACCC
TGAGTGATGACTCCACACCCCCGAGCAGCAGCCCCAAGATCCCGAGTGGTCCCCGGCAGG
GGGCCAAGTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTACGCCGAGCATCCACGAGCAAGAGCCGGAAGGAGAAGGGCAGCAATCGCCTGTCCA
TGGGCAGCAGGGAGTCGGTGGAGGGCTCCAGCAGGTCGGGGGGCTCGCCGTTCCTGCCCT
TTTCCTGGTTCACAGACAGTGGCAAGGCCTCCGCGTCCTCCGGCAGCACCACCTCCCCAG
GCTGTTCCCCCAAACATGAGGGCTTCAGCCCTAAAAAGTCAGCTTCTCAGGAATCCACCC
TGAGTGATGACTCCACACCCCCGAGCAGCAGCCCCAAGATCCCGAGTGGTCCCCGGCAGG
GGGCCAAGTGTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               67-165, - strand, RNAz p=0.968316
               

               
               113-231, + strand, RNAz p=0.562573

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               67-165, - strand, RNAz p=0.968316
               

               
               113-231, + strand, RNAz p=0.562573

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               67-231, gnl|bosTau2|chr19 (29254380-29254544)
               

               
               67-231, gnl|canFam2|chr9 (29444694-29444855)
               

               
               67-231, gnl|dasNov1|scaffold_44507 (12563-12724)
               

               
               67-231, gnl|echTel1|scaffold_156574 (4371-4215)
               

               
               67-231, gnl|hg17|chr17 (45547907-45548068)
               

               
               67-231, gnl|Hg17|chr17 (45548090-45547926)
               

               
               67-231, gnl|loxAfr1|scaffold_203647 (165-5)
               

               
               67-231, gnl|mm7|chr11 (95130764-95130608)
               

               
               67-231, gnl|Mm7|chr11 (95130584-95130748)
               

               
               67-231, gnl|monDom2|scaffold_18 (43288099-43287942)
               

               
               67-231, gnl|oryCun1|scaffold_129217 (884-726)
               

               
               67-231, gnl|panTro1|chr19_random (31164834-31164995)
               

               
               67-231, gnl|rheMac2|chr16 (34352368-34352529)
               

               
               67-231, gnl|rn3|chr10 (83720252-83720070)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-231, gnl|bosTau2|chr19 (29254380-29254544)
               

               
               67-231, gnl|canFam2|chr9 (29444694-29444855)
               

               
               67-231, gnl|dasNov1|scaffold_44507 (12563-12724)
               

               
               67-231, gnl|echTel1|scaffold_156574 (4371-4215)
               

               
               67-231, gnl|hg17|chr17 (45547907-45548068)
               

               
               67-231, gnl|Hg17|chr17 (45548090-45547926)
               

               
               67-231, gnl|loxAfr1|scaffold_203647 (165-5)
               

               
               67-231, gnl|mm7|chr11 (95130764-95130608)
               

               
               67-231, gnl|Mm7|chr11 (95130584-95130748)
               

               
               67-231, gnl|monDom2|scaffold_18 (43288099-43287942)
               

               
               67-231, gnl|oryCun1|scaffold_129217 (884-726)
               

               
               67-231, gnl|panTro1|chr19_random (31164834-31164995)
               

               
               67-231, gnl|rheMac2|chr16 (34352368-34352529)
               

               
               67-231, gnl|rn3|chr10 (83720252-83720070)

	67-165, - strand, RNAz p=0.968316
	113-231, + strand, RNAz p=0.562573

	67-231, gnl\|bosTau2\|chr19 (29254380-29254544)
	67-231, gnl\|canFam2\|chr9 (29444694-29444855)
	67-231, gnl\|dasNov1\|scaffold_44507 (12563-12724)
	67-231, gnl\|echTel1\|scaffold_156574 (4371-4215)
	67-231, gnl\|hg17\|chr17 (45547907-45548068)
	67-231, gnl\|Hg17\|chr17 (45548090-45547926)
	67-231, gnl\|loxAfr1\|scaffold_203647 (165-5)
	67-231, gnl\|mm7\|chr11 (95130764-95130608)
	67-231, gnl\|Mm7\|chr11 (95130584-95130748)
	67-231, gnl\|monDom2\|scaffold_18 (43288099-43287942)
	67-231, gnl\|oryCun1\|scaffold_129217 (884-726)
	67-231, gnl\|panTro1\|chr19_random (31164834-31164995)
	67-231, gnl\|rheMac2\|chr16 (34352368-34352529)
	67-231, gnl\|rn3\|chr10 (83720252-83720070)