Non-Coding RNA Search

Ss1.1-Pig2-39K08.5

Sequence:


               
               GTTAAGTAAACCTTTCTCACCGCCCCTGTGTGTGCCATGAAGTCGCAGTGTTGTAGTGGC
TCTGGGCTTCAGCGGTGTTTGCCACGGCCATCCCTGTGAGAGTGCCACCCCTGTCCCCAC
AGACCAGTCATCTCCATTGCTTTCGCTTTGCCCGTGATGCCTGTTGGAGTAGATGAAGTA
TTGTGTCTTCCCTCCTTTTACCACTGTCCTTTTAGGCTGTAGCTCCTACCAGTTGGGGAT
GGGCTGACCTTGGTGTGAAAGAATGTTGGAGCAGCATCCTACCAAAAAGCGACTGATATG
GATTGGCTCTCAGCCGTTGGGTGCCTGCTGCTGGCAGCGTGTGCCCTGAGAGGCCCGCGG
CACCAGGCTGGAGGGAAAATGGCAAACTTTTGGCTGAACTGGAGAATGTCCGAACAAACC
CCTTCCAGAATGGCTTTTAGTCTCTAGTGCCTGCTAGCATGGGAGCTTTGTCTTGAATTC
CTTTTGATCTGCCCTGTTTCTCTCCAGCCTTAGGAATAAATCCAGAGGCTATTGTGCAGA
GGCTATCAGGCTTCTCAGAAGTCTCTAAATTTACTTGAAACTTAGAATAGCCCAACAAAC
TACGGAAGTTCTTGGCCAGCCTGCTGCTTTGCCCTTGAAGGCAGTGAGTAGCTGGCTAAG
GAGTTTTCAAATTCTCTGTATCAACAGAGAGAGTGAGCCCTGAACCAAACACCTGTATTC
CAACATTTTACATAGCAGCCCAGGCACCCTGTGCCTAAGAAAGCTGGCCACGCATCTGCC
CCGAGTCTTACCTGGGCCAGGGGCTGTTGCTCTTTGGAAAACCAGAATGCCATTAAGTCA
GGCATGAAGAGGCAGTTGCTTCCATAACAAGGCAGCCACCAGGTAGAGCACAGGGGGATT
CTGCACTCAATCAACATCTTTTGTTGTTGCTTCCAGGGCAGCAGAAGAAGCCTTTGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAAGTAAACCTTTCTCACCGCCCCTGTGTGTGCCATGAAGTCGCAGTGTTGTAGTGGC
TCTGGGCTTCAGCGGTGTTTGCCACGGCCATCCCTGTGAGAGTGCCACCCCTGTCCCCAC
AGACCAGTCATCTCCATTGCTTTCGCTTTGCCCGTGATGCCTGTTGGAGTAGATGAAGTA
TTGTGTCTTCCCTCCTTTTACCACTGTCCTTTTAGGCTGTAGCTCCTACCAGTTGGGGAT
GGGCTGACCTTGGTGTGAAAGAATGTTGGAGCAGCATCCTACCAAAAAGCGACTGATATG
GATTGGCTCTCAGCCGTTGGGTGCCTGCTGCTGGCAGCGTGTGCCCTGAGAGGCCCGCGG
CACCAGGCTGGAGGGAAAATGGCAAACTTTTGGCTGAACTGGAGAATGTCCGAACAAACC
CCTTCCAGAATGGCTTTTAGTCTCTAGTGCCTGCTAGCATGGGAGCTTTGTCTTGAATTC
CTTTTGATCTGCCCTGTTTCTCTCCAGCCTTAGGAATAAATCCAGAGGCTATTGTGCAGA
GGCTATCAGGCTTCTCAGAAGTCTCTAAATTTACTTGAAACTTAGAATAGCCCAACAAAC
TACGGAAGTTCTTGGCCAGCCTGCTGCTTTGCCCTTGAAGGCAGTGAGTAGCTGGCTAAG
GAGTTTTCAAATTCTCTGTATCAACAGAGAGAGTGAGCCCTGAACCAAACACCTGTATTC
CAACATTTTACATAGCAGCCCAGGCACCCTGTGCCTAAGAAAGCTGGCCACGCATCTGCC
CCGAGTCTTACCTGGGCCAGGGGCTGTTGCTCTTTGGAAAACCAGAATGCCATTAAGTCA
GGCATGAAGAGGCAGTTGCTTCCATAACAAGGCAGCCACCAGGTAGAGCACAGGGGGATT
CTGCACTCAATCAACATCTTTTGTTGTTGCTTCCAGGGCAGCAGAAGAAGCCTTTGTAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               232-340, - strand, RNAz p=0.871226
               

               
               458-824, + strand, RNAz p=0.99988

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-340, - strand, RNAz p=0.871226
               

               
               458-824, + strand, RNAz p=0.99988

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               635-702, + strand, RNAmicro p=1

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               635-702, + strand, RNAmicro p=1

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-960, gnl|bosTau2|chr8 (31949833-31950805)
               

               
               1-960, gnl|Hg17|chr9 (36200658-36201623)
               

               
               1-960, gnl|Mm7|chr4 (44045250-44046238)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr8 (31949833-31950805)
               

               
               1-960, gnl|Hg17|chr9 (36200658-36201623)
               

               
               1-960, gnl|Mm7|chr4 (44045250-44046238)

	232-340, - strand, RNAz p=0.871226
	458-824, + strand, RNAz p=0.99988

	1-960, gnl\|bosTau2\|chr8 (31949833-31950805)
	1-960, gnl\|Hg17\|chr9 (36200658-36201623)
	1-960, gnl\|Mm7\|chr4 (44045250-44046238)