Non-Coding RNA Search

Ss1.1-Pig2-3H18.5

Sequence:


               
               ACTATACCGCCTCCTTTGCCTACACACCTGCAGGAGGGTGCCCCTTGGGCCAAGTTCCCC
TCTCAGTGTATCCCAACCCACTCTGGGTAGCCATGAGGGGAGGCCTGCTGGCCCAGGTGC
TGGCCACACAGCGCCCCATCACCTCATCCCCAGCCCTGTCCCTGGTATAGCCAGCAGTGC
TCCAGGGAGAGCCCTGCAGGTGCCTGGGGAGATGACTCCTCCACTTCACGGACCTCGTGC
CCGGATCCGGAAGAAACCCAAGGCTATTCCCTACAGACGGGAGCACAGCCCGGGTGACTT
GCCACCACCACCCTTGCCACCACCAGAGGAAGAGGCAAGCTGGGCTGTGGGGCTTCGAGC
AGCAGGCAGCATGTCCTCCTTGGAACGGGAGCGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTATACCGCCTCCTTTGCCTACACACCTGCAGGAGGGTGCCCCTTGGGCCAAGTTCCCC
TCTCAGTGTATCCCAACCCACTCTGGGTAGCCATGAGGGGAGGCCTGCTGGCCCAGGTGC
TGGCCACACAGCGCCCCATCACCTCATCCCCAGCCCTGTCCCTGGTATAGCCAGCAGTGC
TCCAGGGAGAGCCCTGCAGGTGCCTGGGGAGATGACTCCTCCACTTCACGGACCTCGTGC
CCGGATCCGGAAGAAACCCAAGGCTATTCCCTACAGACGGGAGCACAGCCCGGGTGACTT
GCCACCACCACCCTTGCCACCACCAGAGGAAGAGGCAAGCTGGGCTGTGGGGCTTCGAGC
AGCAGGCAGCATGTCCTCCTTGGAACGGGAGCGGGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               29-147, + strand, RNAz p=0.92284
               

               
               44-163, - strand, RNAz p=0.672498

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               29-147, + strand, RNAz p=0.92284
               

               
               44-163, - strand, RNAz p=0.672498

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               91-198, - strand, RNAmicro p=0.997348

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               91-198, - strand, RNAmicro p=0.997348

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC008623, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC008623, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               29-205, gnl|bosTau2|chr29 (20737249-20737078)
               

               
               29-205, gnl|canFam2|chr5 (12567029-12566365)
               

               
               29-205, gnl|dasNov1|scaffold_12053 (6272-5602)
               

               
               29-205, gnl|echTel1|scaffold_320545 (104982-104319)
               

               
               29-205, gnl|hg17|chr11 (124254244-124254890)
               

               
               29-205, gnl|Hg17|chr11 (124254291-124254464)
               

               
               29-205, gnl|loxAfr1|scaffold_123426 (5249-4576)
               

               
               29-205, gnl|mm7|chr9 (37346741-37346125)
               

               
               29-205, gnl|Mm7|chr9 (37346693-37346520)
               

               
               29-205, gnl|monDom2|scaffold_15 (10615175-10615884)
               

               
               29-205, gnl|panTro1|chr9 (126337015-126337661)
               

               
               29-205, gnl|rheMac2|chr14 (123025399-123026031)
               

               
               29-205, gnl|rn3|chr8 (38680305-38679699)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-205, gnl|bosTau2|chr29 (20737249-20737078)
               

               
               29-205, gnl|canFam2|chr5 (12567029-12566365)
               

               
               29-205, gnl|dasNov1|scaffold_12053 (6272-5602)
               

               
               29-205, gnl|echTel1|scaffold_320545 (104982-104319)
               

               
               29-205, gnl|hg17|chr11 (124254244-124254890)
               

               
               29-205, gnl|Hg17|chr11 (124254291-124254464)
               

               
               29-205, gnl|loxAfr1|scaffold_123426 (5249-4576)
               

               
               29-205, gnl|mm7|chr9 (37346741-37346125)
               

               
               29-205, gnl|Mm7|chr9 (37346693-37346520)
               

               
               29-205, gnl|monDom2|scaffold_15 (10615175-10615884)
               

               
               29-205, gnl|panTro1|chr9 (126337015-126337661)
               

               
               29-205, gnl|rheMac2|chr14 (123025399-123026031)
               

               
               29-205, gnl|rn3|chr8 (38680305-38679699)

	29-147, + strand, RNAz p=0.92284
	44-163, - strand, RNAz p=0.672498

	29-205, gnl\|bosTau2\|chr29 (20737249-20737078)
	29-205, gnl\|canFam2\|chr5 (12567029-12566365)
	29-205, gnl\|dasNov1\|scaffold_12053 (6272-5602)
	29-205, gnl\|echTel1\|scaffold_320545 (104982-104319)
	29-205, gnl\|hg17\|chr11 (124254244-124254890)
	29-205, gnl\|Hg17\|chr11 (124254291-124254464)
	29-205, gnl\|loxAfr1\|scaffold_123426 (5249-4576)
	29-205, gnl\|mm7\|chr9 (37346741-37346125)
	29-205, gnl\|Mm7\|chr9 (37346693-37346520)
	29-205, gnl\|monDom2\|scaffold_15 (10615175-10615884)
	29-205, gnl\|panTro1\|chr9 (126337015-126337661)
	29-205, gnl\|rheMac2\|chr14 (123025399-123026031)
	29-205, gnl\|rn3\|chr8 (38680305-38679699)