Non-Coding RNA Search

Ss1.1-Pig2-40H13.5

Sequence:


               
               GACAATCGCCCACAATTTACAGAGAAAGCTAAAGACTCAGAAAGAAAGACTGGAGAGCAA
GGAGCTGCACGTGAACCTCCTCCGGCAGAAAATAGCCCAGCTGGAGGAGGAGAGGCAGAT
GCGATCGGCCCTGACTGTGGAGCGGGACGAGGCCAAGGTCACCATCAGGAAGTTGCAGAA
ACAGGTGGAGAGGCTGCAGAAGGAGCTGAGCCTGTGTCGAGAAATGAATACTGAGCTCAA
AGCCAAACTGGCCGACACCAATGAGCTTAAGGAGTCTCCATCGTGGCATCCTGAATTGAT
TCCTGAACTTAGTCACCACCTTCAAGGAATTTCTAACGTTGTTTGGCAAATTGGTCTTAT
AATTGAAGTTTCTGGACATGAATAAAAGACTGTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAATCGCCCACAATTTACAGAGAAAGCTAAAGACTCAGAAAGAAAGACTGGAGAGCAA
GGAGCTGCACGTGAACCTCCTCCGGCAGAAAATAGCCCAGCTGGAGGAGGAGAGGCAGAT
GCGATCGGCCCTGACTGTGGAGCGGGACGAGGCCAAGGTCACCATCAGGAAGTTGCAGAA
ACAGGTGGAGAGGCTGCAGAAGGAGCTGAGCCTGTGTCGAGAAATGAATACTGAGCTCAA
AGCCAAACTGGCCGACACCAATGAGCTTAAGGAGTCTCCATCGTGGCATCCTGAATTGAT
TCCTGAACTTAGTCACCACCTTCAAGGAATTTCTAACGTTGTTTGGCAAATTGGTCTTAT
AATTGAAGTTTCTGGACATGAATAAAAGACTGTAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               106-225, + strand, RNAz p=0.754288

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-225, + strand, RNAz p=0.754288

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               27-272, gnl|bosTau2|chr9 (52696246-52696001)
               

               
               27-272, gnl|canFam2|chr1 (44961037-44961331)
               

               
               27-272, gnl|danRer3|chr17 (4902122-4902415)
               

               
               27-272, gnl|dasNov1|scaffold_83119 (3130-3431)
               

               
               27-272, gnl|echTel1|scaffold_309435 (54675-54975)
               

               
               27-272, gnl|fr1|chrUn (2390014-2389751)
               

               
               27-272, gnl|galGal2|chr3 (47903918-47904227)
               

               
               27-272, gnl|hg17|chr6 (152009546-152009838)
               

               
               27-272, gnl|Hg17|chr6 (152009582-152009827)
               

               
               27-272, gnl|loxAfr1|scaffold_102443 (930-628)
               

               
               27-272, gnl|mm7|chr10 (5797666-5797368)
               

               
               27-272, gnl|Mm7|chr10 (5797622-5797377)
               

               
               27-272, gnl|monDom2|scaffold_0 (54227172-54226885)
               

               
               27-272, gnl|oryCun1|scaffold_204776 (3519-3815)
               

               
               27-272, gnl|panTro1|chr5 (155524770-155525062)
               

               
               27-272, gnl|rheMac2|chr4 (111473559-111473268)
               

               
               27-272, gnl|rn3|chr1 (35280046-35280343)
               

               
               27-272, gnl|xenTro1|scaffold_612 (408175-408467)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-272, gnl|bosTau2|chr9 (52696246-52696001)
               

               
               27-272, gnl|canFam2|chr1 (44961037-44961331)
               

               
               27-272, gnl|danRer3|chr17 (4902122-4902415)
               

               
               27-272, gnl|dasNov1|scaffold_83119 (3130-3431)
               

               
               27-272, gnl|echTel1|scaffold_309435 (54675-54975)
               

               
               27-272, gnl|fr1|chrUn (2390014-2389751)
               

               
               27-272, gnl|galGal2|chr3 (47903918-47904227)
               

               
               27-272, gnl|hg17|chr6 (152009546-152009838)
               

               
               27-272, gnl|Hg17|chr6 (152009582-152009827)
               

               
               27-272, gnl|loxAfr1|scaffold_102443 (930-628)
               

               
               27-272, gnl|mm7|chr10 (5797666-5797368)
               

               
               27-272, gnl|Mm7|chr10 (5797622-5797377)
               

               
               27-272, gnl|monDom2|scaffold_0 (54227172-54226885)
               

               
               27-272, gnl|oryCun1|scaffold_204776 (3519-3815)
               

               
               27-272, gnl|panTro1|chr5 (155524770-155525062)
               

               
               27-272, gnl|rheMac2|chr4 (111473559-111473268)
               

               
               27-272, gnl|rn3|chr1 (35280046-35280343)
               

               
               27-272, gnl|xenTro1|scaffold_612 (408175-408467)

	27-272, gnl\|bosTau2\|chr9 (52696246-52696001)
	27-272, gnl\|canFam2\|chr1 (44961037-44961331)
	27-272, gnl\|danRer3\|chr17 (4902122-4902415)
	27-272, gnl\|dasNov1\|scaffold_83119 (3130-3431)
	27-272, gnl\|echTel1\|scaffold_309435 (54675-54975)
	27-272, gnl\|fr1\|chrUn (2390014-2389751)
	27-272, gnl\|galGal2\|chr3 (47903918-47904227)
	27-272, gnl\|hg17\|chr6 (152009546-152009838)
	27-272, gnl\|Hg17\|chr6 (152009582-152009827)
	27-272, gnl\|loxAfr1\|scaffold_102443 (930-628)
	27-272, gnl\|mm7\|chr10 (5797666-5797368)
	27-272, gnl\|Mm7\|chr10 (5797622-5797377)
	27-272, gnl\|monDom2\|scaffold_0 (54227172-54226885)
	27-272, gnl\|oryCun1\|scaffold_204776 (3519-3815)
	27-272, gnl\|panTro1\|chr5 (155524770-155525062)
	27-272, gnl\|rheMac2\|chr4 (111473559-111473268)
	27-272, gnl\|rn3\|chr1 (35280046-35280343)
	27-272, gnl\|xenTro1\|scaffold_612 (408175-408467)