Non-Coding RNA Search

Ss1.1-Pig2-41D14.5

Sequence:


               
               GGAAGGGAAGAGTCGCCCCCGGCCTGGGGAGACCACGGTGTTCTCTGTGGGCAGGTTCCG
GGTGACACACATTGAGAAGCGCTATGGGCTGCACGAGCATCGTGATGGCTCCCCCACGGA
CAGGAGCTGGGGCTCTAGCGGGGGGCAGGACCCAGGGGGCGGTCAGGGCCTTGGGGGAGG
GCAGCCCAGGGCAGGGATGCCCGCTGTTGAGAGCCTGCCCCCGCCCCCTGAGAGGCCACA
GCGCCAGGTCCTGGCCAGCCCCCCGGTGCAGAATGGAGGACTCAGGGACAGCAATCTAGT
CCCTCGGGCGCTTGAGGGGAATCCTGGAGCCTCTGCAGAGCCAGTACCAGGGGCTGCAGG
GAGGGGCCCAAGCCCAGGGCCAGCCAAGCAAGAGGCACATGGACGGCCAAGCAAACCGGA
CACCTCCAGTCACCAGGTGTCCCCACCACGGGGAGCAGGGGGTGTGTGAGCCGCCTCCTT
CTCTGCGCTGATGGACTGACTACCAGCTGGCAGGGCCCAGGGGAGGGGGGCCTGAAGCCC
TTCATCTCCACTGGACAGCACTGCCCTCCAGCTGAGGGACCAGCCCTCCTTCCACCTGGA
GTTGCACGGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGGAAGAGTCGCCCCCGGCCTGGGGAGACCACGGTGTTCTCTGTGGGCAGGTTCCG
GGTGACACACATTGAGAAGCGCTATGGGCTGCACGAGCATCGTGATGGCTCCCCCACGGA
CAGGAGCTGGGGCTCTAGCGGGGGGCAGGACCCAGGGGGCGGTCAGGGCCTTGGGGGAGG
GCAGCCCAGGGCAGGGATGCCCGCTGTTGAGAGCCTGCCCCCGCCCCCTGAGAGGCCACA
GCGCCAGGTCCTGGCCAGCCCCCCGGTGCAGAATGGAGGACTCAGGGACAGCAATCTAGT
CCCTCGGGCGCTTGAGGGGAATCCTGGAGCCTCTGCAGAGCCAGTACCAGGGGCTGCAGG
GAGGGGCCCAAGCCCAGGGCCAGCCAAGCAAGAGGCACATGGACGGCCAAGCAAACCGGA
CACCTCCAGTCACCAGGTGTCCCCACCACGGGGAGCAGGGGGTGTGTGAGCCGCCTCCTT
CTCTGCGCTGATGGACTGACTACCAGCTGGCAGGGCCCAGGGGAGGGGGGCCTGAAGCCC
TTCATCTCCACTGGACAGCACTGCCCTCCAGCTGAGGGACCAGCCCTCCTTCCACCTGGA
GTTGCACGGTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8NC24_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8NC24_HUMAN

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               102-298, - strand, RNAz p=0.692544
               

               
               171-290, - strand, RNAz p=0.917956
               

               
               469-612, - strand, RNAz p=0.970406
               

               
               471-612, - strand, RNAz p=0.892622

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               102-298, - strand, RNAz p=0.692544
               

               
               171-290, - strand, RNAz p=0.917956
               

               
               469-612, - strand, RNAz p=0.970406
               

               
               471-612, - strand, RNAz p=0.892622

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               137-270, - strand, RNAmicro p=0.999459
               

               
               492-583, + strand, RNAmicro p=0.921238

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               137-270, - strand, RNAmicro p=0.999459
               

               
               492-583, + strand, RNAmicro p=0.921238

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of AY358478, -
               

               
               5' of AY358478, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AY358478, -
               

               
               5' of AY358478, -

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               52-438, gnl|bosTau2|chr7 (35471492-35471872)
               

               
               52-438, gnl|canFam2|chr2 (39450213-39451480)
               

               
               52-438, gnl|echTel1|scaffold_318530 (37592-36314)
               

               
               52-438, gnl|hg17|chr5 (140999404-141000649)
               

               
               52-438, gnl|Hg17|chr5 (140999668-141000048)
               

               
               52-438, gnl|mm7|chr18 (38333979-38335202)
               

               
               52-438, gnl|Mm7|chr18 (38334212-38334592)
               

               
               52-438, gnl|monDom2|scaffold_6 (66967672-66966282)
               

               
               52-438, gnl|panTro1|chr4 (147635472-147636717)
               

               
               52-438, gnl|rheMac2|chr6 (138037808-138039056)
               

               
               52-438, gnl|rn3|chr18 (30905439-30906651)
               


               
               469-612, gnl|bosTau2|chr7 (35472260-35472399)
               

               
               469-612, gnl|canFam2|chr2 (39450213-39451480)
               

               
               469-612, gnl|echTel1|scaffold_318530 (37592-36314)
               

               
               469-612, gnl|hg17|chr5 (140999404-141000649)
               

               
               469-612, gnl|Hg17|chr5 (141000420-141000557)
               

               
               469-612, gnl|mm7|chr18 (38333979-38335202)
               

               
               469-612, gnl|Mm7|chr18 (38334958-38335098)
               

               
               469-612, gnl|monDom2|scaffold_6 (66967672-66966282)
               

               
               469-612, gnl|panTro1|chr4 (147635472-147636717)
               

               
               469-612, gnl|rheMac2|chr6 (138037808-138039056)
               

               
               469-612, gnl|rn3|chr18 (30905439-30906651)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-438, gnl|bosTau2|chr7 (35471492-35471872)
               

               
               52-438, gnl|canFam2|chr2 (39450213-39451480)
               

               
               52-438, gnl|echTel1|scaffold_318530 (37592-36314)
               

               
               52-438, gnl|hg17|chr5 (140999404-141000649)
               

               
               52-438, gnl|Hg17|chr5 (140999668-141000048)
               

               
               52-438, gnl|mm7|chr18 (38333979-38335202)
               

               
               52-438, gnl|Mm7|chr18 (38334212-38334592)
               

               
               52-438, gnl|monDom2|scaffold_6 (66967672-66966282)
               

               
               52-438, gnl|panTro1|chr4 (147635472-147636717)
               

               
               52-438, gnl|rheMac2|chr6 (138037808-138039056)
               

               
               52-438, gnl|rn3|chr18 (30905439-30906651)
               


               
               469-612, gnl|bosTau2|chr7 (35472260-35472399)
               

               
               469-612, gnl|canFam2|chr2 (39450213-39451480)
               

               
               469-612, gnl|echTel1|scaffold_318530 (37592-36314)
               

               
               469-612, gnl|hg17|chr5 (140999404-141000649)
               

               
               469-612, gnl|Hg17|chr5 (141000420-141000557)
               

               
               469-612, gnl|mm7|chr18 (38333979-38335202)
               

               
               469-612, gnl|Mm7|chr18 (38334958-38335098)
               

               
               469-612, gnl|monDom2|scaffold_6 (66967672-66966282)
               

               
               469-612, gnl|panTro1|chr4 (147635472-147636717)
               

               
               469-612, gnl|rheMac2|chr6 (138037808-138039056)
               

               
               469-612, gnl|rn3|chr18 (30905439-30906651)

	102-298, - strand, RNAz p=0.692544
	171-290, - strand, RNAz p=0.917956
	469-612, - strand, RNAz p=0.970406
	471-612, - strand, RNAz p=0.892622

	137-270, - strand, RNAmicro p=0.999459
	492-583, + strand, RNAmicro p=0.921238

	52-438, gnl\|bosTau2\|chr7 (35471492-35471872)
	52-438, gnl\|canFam2\|chr2 (39450213-39451480)
	52-438, gnl\|echTel1\|scaffold_318530 (37592-36314)
	52-438, gnl\|hg17\|chr5 (140999404-141000649)
	52-438, gnl\|Hg17\|chr5 (140999668-141000048)
	52-438, gnl\|mm7\|chr18 (38333979-38335202)
	52-438, gnl\|Mm7\|chr18 (38334212-38334592)
	52-438, gnl\|monDom2\|scaffold_6 (66967672-66966282)
	52-438, gnl\|panTro1\|chr4 (147635472-147636717)
	52-438, gnl\|rheMac2\|chr6 (138037808-138039056)
	52-438, gnl\|rn3\|chr18 (30905439-30906651)

	469-612, gnl\|bosTau2\|chr7 (35472260-35472399)
	469-612, gnl\|canFam2\|chr2 (39450213-39451480)
	469-612, gnl\|echTel1\|scaffold_318530 (37592-36314)
	469-612, gnl\|hg17\|chr5 (140999404-141000649)
	469-612, gnl\|Hg17\|chr5 (141000420-141000557)
	469-612, gnl\|mm7\|chr18 (38333979-38335202)
	469-612, gnl\|Mm7\|chr18 (38334958-38335098)
	469-612, gnl\|monDom2\|scaffold_6 (66967672-66966282)
	469-612, gnl\|panTro1\|chr4 (147635472-147636717)
	469-612, gnl\|rheMac2\|chr6 (138037808-138039056)
	469-612, gnl\|rn3\|chr18 (30905439-30906651)