Non-Coding RNA Search

Ss1.1-Pig2-41K06.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTAATTAAGCGCTCCAGACTCTCCTGGAGGAAAAAAAATCAGTT
TGGGGTCACTCATAAGTTTAAAACATCAACTCAGGCAGGGCTGCTCTGTCTGCAGAGAAG
GAGACATACAAGGGCTTAATTCCCCAGACTGCAGAAATGAGGACAGAGGGCCCTATGTAA
TGATAAAGTAGGAAAAGAACCACATCCAAGATGAGGCGAGGAGAGAGCTGTGGACATGGC
CGGATGGCCAGAGGAGGCAGAGGAAGAAGGGACAGAGAAGAAGCCAAACTTGACCATGTA
GAGAAAAGAAGGTGGTTAAGTGCTGAAGTTACCGCTGCCCCCAAGGAAATGGGTGAGTCA
GAGCGAGGGGCTCTGGAGTTCAGCGGCAGCTGTGCCTCATGGCATAAAATGATGGTTACT
GCGCGTCCATCGCTCTTAACCCTTCAAAATATTCCAGGGCTCTTTTCAACACGGACCACC
TGTGGCCGAGAGCTGGGGAGAAATGGACACTCGGGCGGCCGTGTCAGTGTGGTCGCCTGA
GAAGGCAGAAGAAGTCCAGCGAAGGCCTGAGCCGGTCGCCTGTGCCACACGCCCGTCCAC
GTGGGCTGCGGCAGCAAGCTCCCTGCCTTCCCTCGCCCAGCCGGTCTGACTCACAACCTG
GAGTCAAACGAGGTCTGGCTGCAGTTTGTACTCCTGTTCCCTACGAGAGCACAGGAGTTG
CTCCGTAAATGAATCATGTAGACAAGGTGGTTAGAAAGTATTTAAACTATTTGAGAGATT
GAAAGTTTTAAGGACTTCATAACCACCTATTTGTTTTCCAAAGAATGCATCTGCTAATAA
AACCGTCCTTCTATTAAAGTCTGCATTCTTTCCTTCCTCCTTTCCCGCAAGGGGCTCTCC
CAGGCAACACGTGACTCACCTCATTTTGGTTTCTGCATGTGCTTATAAGCTTTGAACTTG
TCTTTTCTTAATAATAATCCAGACTCTTCACTAACTCCGATTTCAATGCATTTTAACATA
TTTCTATCCAGATTTTCTTTGCTTTGAACAATAAGACTTTTGCCTCGTGTTTTCCTCACA
GAGCACAAAGTTATGAGAAAGTCTATACAACTAGCTCTGTCGTTAATGGATAATGACTCT
CCATCCCGGCAGTGTGACGTGTTAGAGGTGGGGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTAATTAAGCGCTCCAGACTCTCCTGGAGGAAAAAAAATCAGTT
TGGGGTCACTCATAAGTTTAAAACATCAACTCAGGCAGGGCTGCTCTGTCTGCAGAGAAG
GAGACATACAAGGGCTTAATTCCCCAGACTGCAGAAATGAGGACAGAGGGCCCTATGTAA
TGATAAAGTAGGAAAAGAACCACATCCAAGATGAGGCGAGGAGAGAGCTGTGGACATGGC
CGGATGGCCAGAGGAGGCAGAGGAAGAAGGGACAGAGAAGAAGCCAAACTTGACCATGTA
GAGAAAAGAAGGTGGTTAAGTGCTGAAGTTACCGCTGCCCCCAAGGAAATGGGTGAGTCA
GAGCGAGGGGCTCTGGAGTTCAGCGGCAGCTGTGCCTCATGGCATAAAATGATGGTTACT
GCGCGTCCATCGCTCTTAACCCTTCAAAATATTCCAGGGCTCTTTTCAACACGGACCACC
TGTGGCCGAGAGCTGGGGAGAAATGGACACTCGGGCGGCCGTGTCAGTGTGGTCGCCTGA
GAAGGCAGAAGAAGTCCAGCGAAGGCCTGAGCCGGTCGCCTGTGCCACACGCCCGTCCAC
GTGGGCTGCGGCAGCAAGCTCCCTGCCTTCCCTCGCCCAGCCGGTCTGACTCACAACCTG
GAGTCAAACGAGGTCTGGCTGCAGTTTGTACTCCTGTTCCCTACGAGAGCACAGGAGTTG
CTCCGTAAATGAATCATGTAGACAAGGTGGTTAGAAAGTATTTAAACTATTTGAGAGATT
GAAAGTTTTAAGGACTTCATAACCACCTATTTGTTTTCCAAAGAATGCATCTGCTAATAA
AACCGTCCTTCTATTAAAGTCTGCATTCTTTCCTTCCTCCTTTCCCGCAAGGGGCTCTCC
CAGGCAACACGTGACTCACCTCATTTTGGTTTCTGCATGTGCTTATAAGCTTTGAACTTG
TCTTTTCTTAATAATAATCCAGACTCTTCACTAACTCCGATTTCAATGCATTTTAACATA
TTTCTATCCAGATTTTCTTTGCTTTGAACAATAAGACTTTTGCCTCGTGTTTTCCTCACA
GAGCACAAAGTTATGAGAAAGTCTATACAACTAGCTCTGTCGTTAATGGATAATGACTCT
CCATCCCGGCAGTGTGACGTGTTAGAGGTGGGGTGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               270-385, - strand, RNAz p=0.817978
               

               
               696-814, - strand, RNAz p=0.831953

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-385, - strand, RNAz p=0.817978
               

               
               696-814, - strand, RNAz p=0.831953

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-1176, gnl|bosTau2|chr11 (23303571-23304745)
               

               
               1-1176, gnl|Hg17|chr2 (46505521-46504366)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1176, gnl|bosTau2|chr11 (23303571-23304745)
               

               
               1-1176, gnl|Hg17|chr2 (46505521-46504366)

	270-385, - strand, RNAz p=0.817978
	696-814, - strand, RNAz p=0.831953

	1-1176, gnl\|bosTau2\|chr11 (23303571-23304745)
	1-1176, gnl\|Hg17\|chr2 (46505521-46504366)