Non-Coding RNA Search

Ss1.1-Pig2-42A08.5

Sequence:


               
               AAAAGGCTCCTGTGTCCAGGGCTGAGCTGCTGAGAGGCCAGCAGAGTTCTCTCAGAGGGG
TTGAGGCCCAATTCCTGAGAGGAGAGCTGTGGGAAGGGAGGTGTTTGCACACCGGACCCG
GTACAGCCTGGTCCTCTCCCACACTTGGGAGGGGCCAGAACCTGAGAGGACAGCCTGGCT
GGTCTGCTGGAGAGGTCATCTGACTGGTATTCATCTTGAGCTGCACACGCCCCCCTCTCT
GACACCAGGCCACACAGGAGCTGGTGCCCACATCAGGCACACCGCGCCCCCAGCACCTCT
GGGCACCCATGGACCCACAAGAACACATAATCACATCTGCACAGAGACTGCACCTACTGA
CCTAAACATCCCAGCCAGAGACCCTGAGGGTGAAAGGCAGACAGCCCTGTGGGCAGGTGG
CCGGCCTTACTTGTAGGCTGGGCTGAGGTGGGGGAAGGGGCTGTTATCTCCCATCCCACA
TACTTAGTCTTGCCACCTCGCCTCACCTCCCCAACAACACAGCGCCAGGAGCACCCAGCC
AGGCCATACAAGGAAGGGACGTGGACCTCAGAAAGGGGTCATCCACCTTAGACCGACAGT
TGGGGAGCCTTGGGATCCACCCTAGAGTCCGGGAGGGTTTGTTTGGTCCTAGTTCTAGCA
GCATCCCTGATCAAGCCTTGCTTCCTAAAGGACGGGCAGCCAGACGCACCATGTCTGTGA
CCAGTGGGAAGACAGGAGCGTCCCTGACTGAAGAGATCCTCAACCACCTGGGCCTTGCTG
ACAAGACTGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGGCTCCTGTGTCCAGGGCTGAGCTGCTGAGAGGCCAGCAGAGTTCTCTCAGAGGGG
TTGAGGCCCAATTCCTGAGAGGAGAGCTGTGGGAAGGGAGGTGTTTGCACACCGGACCCG
GTACAGCCTGGTCCTCTCCCACACTTGGGAGGGGCCAGAACCTGAGAGGACAGCCTGGCT
GGTCTGCTGGAGAGGTCATCTGACTGGTATTCATCTTGAGCTGCACACGCCCCCCTCTCT
GACACCAGGCCACACAGGAGCTGGTGCCCACATCAGGCACACCGCGCCCCCAGCACCTCT
GGGCACCCATGGACCCACAAGAACACATAATCACATCTGCACAGAGACTGCACCTACTGA
CCTAAACATCCCAGCCAGAGACCCTGAGGGTGAAAGGCAGACAGCCCTGTGGGCAGGTGG
CCGGCCTTACTTGTAGGCTGGGCTGAGGTGGGGGAAGGGGCTGTTATCTCCCATCCCACA
TACTTAGTCTTGCCACCTCGCCTCACCTCCCCAACAACACAGCGCCAGGAGCACCCAGCC
AGGCCATACAAGGAAGGGACGTGGACCTCAGAAAGGGGTCATCCACCTTAGACCGACAGT
TGGGGAGCCTTGGGATCCACCCTAGAGTCCGGGAGGGTTTGTTTGGTCCTAGTTCTAGCA
GCATCCCTGATCAAGCCTTGCTTCCTAAAGGACGGGCAGCCAGACGCACCATGTCTGTGA
CCAGTGGGAAGACAGGAGCGTCCCTGACTGAAGAGATCCTCAACCACCTGGGCCTTGCTG
ACAAGACTGCAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               39-231, - strand, RNAz p=0.989835
               

               
               40-227, - strand, RNAz p=0.912901

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-231, - strand, RNAz p=0.989835
               

               
               40-227, - strand, RNAz p=0.912901

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               59-170, + strand, RNAmicro p=0.998847
               

               
               43-170, - strand, RNAmicro p=0.992204

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               59-170, + strand, RNAmicro p=0.998847
               

               
               43-170, - strand, RNAmicro p=0.992204

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               2-285, gnl|bosTau2|chr3 (16571630-16571354)
               

               
               2-285, gnl|canFam2|chr17 (63162705-63163642)
               

               
               2-285, gnl|dasNov1|scaffold_133074 (6087-5156)
               

               
               2-285, gnl|hg17|chr1 (147767196-147768169)
               

               
               2-285, gnl|Hg17|chr1 (147767600-147767890)
               

               
               2-285, gnl|loxAfr1|scaffold_493 (83230-82293)
               

               
               2-285, gnl|mm7|chr3 (95181796-95180811)
               

               
               2-285, gnl|Mm7|chr3 (95181338-95181056)
               

               
               2-285, gnl|monDom2|scaffold_44 (4150207-4151154)
               

               
               2-285, gnl|oryCun1|scaffold_204633 (43333-42326)
               

               
               2-285, gnl|panTro1|chr1 (129501310-129502310)
               

               
               2-285, gnl|rheMac2|chr1 (129390838-129391803)
               

               
               2-285, gnl|rn3|chr2 (190179189-190178261)
               


               
               302-695, gnl|bosTau2|chr3 (16571196-16570801)
               

               
               302-695, gnl|Hg17|chr1 (147768035-147768431)
               

               
               302-695, gnl|Mm7|chr3 (95180924-95180576)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-285, gnl|bosTau2|chr3 (16571630-16571354)
               

               
               2-285, gnl|canFam2|chr17 (63162705-63163642)
               

               
               2-285, gnl|dasNov1|scaffold_133074 (6087-5156)
               

               
               2-285, gnl|hg17|chr1 (147767196-147768169)
               

               
               2-285, gnl|Hg17|chr1 (147767600-147767890)
               

               
               2-285, gnl|loxAfr1|scaffold_493 (83230-82293)
               

               
               2-285, gnl|mm7|chr3 (95181796-95180811)
               

               
               2-285, gnl|Mm7|chr3 (95181338-95181056)
               

               
               2-285, gnl|monDom2|scaffold_44 (4150207-4151154)
               

               
               2-285, gnl|oryCun1|scaffold_204633 (43333-42326)
               

               
               2-285, gnl|panTro1|chr1 (129501310-129502310)
               

               
               2-285, gnl|rheMac2|chr1 (129390838-129391803)
               

               
               2-285, gnl|rn3|chr2 (190179189-190178261)
               


               
               302-695, gnl|bosTau2|chr3 (16571196-16570801)
               

               
               302-695, gnl|Hg17|chr1 (147768035-147768431)
               

               
               302-695, gnl|Mm7|chr3 (95180924-95180576)

	39-231, - strand, RNAz p=0.989835
	40-227, - strand, RNAz p=0.912901

	59-170, + strand, RNAmicro p=0.998847
	43-170, - strand, RNAmicro p=0.992204

	2-285, gnl\|bosTau2\|chr3 (16571630-16571354)
	2-285, gnl\|canFam2\|chr17 (63162705-63163642)
	2-285, gnl\|dasNov1\|scaffold_133074 (6087-5156)
	2-285, gnl\|hg17\|chr1 (147767196-147768169)
	2-285, gnl\|Hg17\|chr1 (147767600-147767890)
	2-285, gnl\|loxAfr1\|scaffold_493 (83230-82293)
	2-285, gnl\|mm7\|chr3 (95181796-95180811)
	2-285, gnl\|Mm7\|chr3 (95181338-95181056)
	2-285, gnl\|monDom2\|scaffold_44 (4150207-4151154)
	2-285, gnl\|oryCun1\|scaffold_204633 (43333-42326)
	2-285, gnl\|panTro1\|chr1 (129501310-129502310)
	2-285, gnl\|rheMac2\|chr1 (129390838-129391803)
	2-285, gnl\|rn3\|chr2 (190179189-190178261)

	302-695, gnl\|bosTau2\|chr3 (16571196-16570801)
	302-695, gnl\|Hg17\|chr1 (147768035-147768431)
	302-695, gnl\|Mm7\|chr3 (95180924-95180576)