Non-Coding RNA Search

Ss1.1-Pig2-42I17.5

Sequence:


               
               GCTCCCCCAGCTCCCTACAACCAGAGTCATCTATGCTAGCTCTCGTGCCTTCTCCTCCGT
CACCCCAGCCAGCGCCACCCCCGATAAGAGTCACCATACTTCCAGGGCCTTTACTTCCAC
AAACTCCACCAACAGCCGGAGTCACACTGGTACCGTAGAGAAGCCAGCTGGGGTATCAGT
CTTACCGAGCGTAGAGGTCACCCAGCAGCCCCAGGCAGAAGACAAAGATGCCACCATCTC
TCTAGATAGCTCTGGCCAGAAATTAGAAGATGCTCTCCAGCTGTCAGATGAGCAGAGCAG
CTCCCCCATCACAGGAAGCCTGATGCAGCTGCTTTTGAACAACCCCTCGCTGGCAGCCCA
GATGATGCTATGCGTGAGTATGCCCCAGCTGAGCCAACAGTGGCAGCAGCAGCTGCTGGC
ATTTCTGCAGCAGACACAGCTCTCCGAGACGCTCATAGCTCTTGGCAACCCTAAAGCATC
GCAAGCAATACTGCAGATTGAGCAGGGTCTGCAGCTGTTGGCCACCGAGGCACCTGTTCT
TCTGCCCTGGGTTGCACCCTACCTGTGGGGCCTGGGGTGGCTGCCTGCACCCAGTTGCAG
CTACCCAGACACAGTGCCCTGGGCCTGGGATACGCCAGATATGGCTAATCCTAACGGGCC
CGAGGCCTGCCACAAATCTGGAACGGTCCTGCAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCCCCAGCTCCCTACAACCAGAGTCATCTATGCTAGCTCTCGTGCCTTCTCCTCCGT
CACCCCAGCCAGCGCCACCCCCGATAAGAGTCACCATACTTCCAGGGCCTTTACTTCCAC
AAACTCCACCAACAGCCGGAGTCACACTGGTACCGTAGAGAAGCCAGCTGGGGTATCAGT
CTTACCGAGCGTAGAGGTCACCCAGCAGCCCCAGGCAGAAGACAAAGATGCCACCATCTC
TCTAGATAGCTCTGGCCAGAAATTAGAAGATGCTCTCCAGCTGTCAGATGAGCAGAGCAG
CTCCCCCATCACAGGAAGCCTGATGCAGCTGCTTTTGAACAACCCCTCGCTGGCAGCCCA
GATGATGCTATGCGTGAGTATGCCCCAGCTGAGCCAACAGTGGCAGCAGCAGCTGCTGGC
ATTTCTGCAGCAGACACAGCTCTCCGAGACGCTCATAGCTCTTGGCAACCCTAAAGCATC
GCAAGCAATACTGCAGATTGAGCAGGGTCTGCAGCTGTTGGCCACCGAGGCACCTGTTCT
TCTGCCCTGGGTTGCACCCTACCTGTGGGGCCTGGGGTGGCTGCCTGCACCCAGTTGCAG
CTACCCAGACACAGTGCCCTGGGCCTGGGATACGCCAGATATGGCTAATCCTAACGGGCC
CGAGGCCTGCCACAAATCTGGAACGGTCCTGCAGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               321-520, - strand, RNAz p=0.991183

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-520, - strand, RNAz p=0.991183

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-696, gnl|bosTau2|chr15 (31212201-31212889)
               

               
               2-696, gnl|Hg17|chr11 (5493281-5492588)
               

               
               2-696, gnl|Mm7|chr7 (100205715-100205032)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-696, gnl|bosTau2|chr15 (31212201-31212889)
               

               
               2-696, gnl|Hg17|chr11 (5493281-5492588)
               

               
               2-696, gnl|Mm7|chr7 (100205715-100205032)

	2-696, gnl\|bosTau2\|chr15 (31212201-31212889)
	2-696, gnl\|Hg17\|chr11 (5493281-5492588)
	2-696, gnl\|Mm7\|chr7 (100205715-100205032)