Non-Coding RNA Search

Ss1.1-Pig2-44J12.5

Sequence:


               
               GAAGACTGGATACTAATCAAAAGAAAAACTGGGCTGGTTGCGGCTTAAAGTCTTAGTAGG
AAATTCCTCCAGCCTCTGGGGCATGTGTTGAACACATGACTACTGCTGGTGATGGCAGAA
GCTCTACACCAGCTGACTACCAGCAACTTGGAAGTTTAGTTCTTTTTCTTTCGCATTTCC
ACTTAACTTGCAGTATTATCAGAATGAAATGTGTGCATAATTTAAAAAAATCAAATGACT
CTACAAAGCCTGTAATGAAAGCTTCTACCCCGTCTGATTTACACTCCTTGAATATCCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGACTGGATACTAATCAAAAGAAAAACTGGGCTGGTTGCGGCTTAAAGTCTTAGTAGG
AAATTCCTCCAGCCTCTGGGGCATGTGTTGAACACATGACTACTGCTGGTGATGGCAGAA
GCTCTACACCAGCTGACTACCAGCAACTTGGAAGTTTAGTTCTTTTTCTTTCGCATTTCC
ACTTAACTTGCAGTATTATCAGAATGAAATGTGTGCATAATTTAAAAAAATCAAATGACT
CTACAAAGCCTGTAATGAAAGCTTCTACCCCGTCTGATTTACACTCCTTGAATATCCATT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-177, - strand, RNAz p=0.99108
               

               
               39-158, + strand, RNAz p=0.644866

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-177, - strand, RNAz p=0.99108
               

               
               39-158, + strand, RNAz p=0.644866

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-267, gnl|bosTau2|chr23 (29523219-29523485)
               

               
               1-267, gnl|canFam2|chr35 (22976475-22976912)
               

               
               1-267, gnl|dasNov1|scaffold_101605 (839-400)
               

               
               1-267, gnl|echTel1|scaffold_324677 (7309-7746)
               

               
               1-267, gnl|hg17|chr6 (21545695-21546140)
               

               
               1-267, gnl|Hg17|chr6 (21546010-21545731)
               

               
               1-267, gnl|loxAfr1|scaffold_9241 (63842-63412)
               

               
               1-267, gnl|mm7|chr13 (28475538-28475057)
               

               
               1-267, gnl|Mm7|chr13 (28475199-28475499)
               

               
               1-267, gnl|oryCun1|scaffold_88113 (3980-3564)
               

               
               1-267, gnl|panTro1|chr5 (21949921-21950365)
               

               
               1-267, gnl|rheMac2|chr4 (21418683-21419126)
               

               
               1-267, gnl|rn3|chr17 (42014276-42014734)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-267, gnl|bosTau2|chr23 (29523219-29523485)
               

               
               1-267, gnl|canFam2|chr35 (22976475-22976912)
               

               
               1-267, gnl|dasNov1|scaffold_101605 (839-400)
               

               
               1-267, gnl|echTel1|scaffold_324677 (7309-7746)
               

               
               1-267, gnl|hg17|chr6 (21545695-21546140)
               

               
               1-267, gnl|Hg17|chr6 (21546010-21545731)
               

               
               1-267, gnl|loxAfr1|scaffold_9241 (63842-63412)
               

               
               1-267, gnl|mm7|chr13 (28475538-28475057)
               

               
               1-267, gnl|Mm7|chr13 (28475199-28475499)
               

               
               1-267, gnl|oryCun1|scaffold_88113 (3980-3564)
               

               
               1-267, gnl|panTro1|chr5 (21949921-21950365)
               

               
               1-267, gnl|rheMac2|chr4 (21418683-21419126)
               

               
               1-267, gnl|rn3|chr17 (42014276-42014734)

	1-177, - strand, RNAz p=0.99108
	39-158, + strand, RNAz p=0.644866

	1-267, gnl\|bosTau2\|chr23 (29523219-29523485)
	1-267, gnl\|canFam2\|chr35 (22976475-22976912)
	1-267, gnl\|dasNov1\|scaffold_101605 (839-400)
	1-267, gnl\|echTel1\|scaffold_324677 (7309-7746)
	1-267, gnl\|hg17\|chr6 (21545695-21546140)
	1-267, gnl\|Hg17\|chr6 (21546010-21545731)
	1-267, gnl\|loxAfr1\|scaffold_9241 (63842-63412)
	1-267, gnl\|mm7\|chr13 (28475538-28475057)
	1-267, gnl\|Mm7\|chr13 (28475199-28475499)
	1-267, gnl\|oryCun1\|scaffold_88113 (3980-3564)
	1-267, gnl\|panTro1\|chr5 (21949921-21950365)
	1-267, gnl\|rheMac2\|chr4 (21418683-21419126)
	1-267, gnl\|rn3\|chr17 (42014276-42014734)