Non-Coding RNA Search

Ss1.1-Pig2-44L16.5

Sequence:


               
               TCAGGATCTGTCCTGGGCTCACAAGCCCCCCACCCTGCAATCATGTGTTCAGTAGCCCCT
CTCTGAGCAGGTAGGGGCCAGAGTCCACGGGGCCCAAGGCAGGACCACCCCTTCTCTGCT
TGCTCTCCCTCATGCTGATCTCTCTGTCCATGGGGGCTGGGTACCCAGGCCTGCCCCACT
GCCCATTAGTTACTTCCGGGCCTGCCTTCTACTCCCAGGGACCCTGGCCACTCAAAGGGT
GGAGGGCACAGGTGTGACCACCCCTGGCTGCAGAGTCAGTGCCCTGGGAGGAAAGAGGGT
CCCACCAAACCCCTTTTTAATCACCTTCCCCCAGGCCAAGGCACCCCGGGCCCTGGGATC
TGAAACCAAACACGCCTCCACTCCCTTCGGCTCCCGCTTCTCGCTGGCCTGGGCTCTCTC
CTGGGAACGGGGCCCTCTGCCCTCCCACCCCTGCTGGCAGGAAGCAGGGCCAAGGGTGGG
GTATTGTGGGACCCGGCTAGAGACCCTGGAGGGGCCAGGGGCCCCGAGGCCTCCACAGCC
CCTGCTTGAGGGGTTCCTTTGCTGCTGGGTTGGGGGAGCAGTGGCAGGGGAGGCCCTGCC
TGTCCCCAGAGGCAGAGCGAGGAGGCCGTGCATGTGGCGCGGGCGTGTGTGTGCATGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGGATCTGTCCTGGGCTCACAAGCCCCCCACCCTGCAATCATGTGTTCAGTAGCCCCT
CTCTGAGCAGGTAGGGGCCAGAGTCCACGGGGCCCAAGGCAGGACCACCCCTTCTCTGCT
TGCTCTCCCTCATGCTGATCTCTCTGTCCATGGGGGCTGGGTACCCAGGCCTGCCCCACT
GCCCATTAGTTACTTCCGGGCCTGCCTTCTACTCCCAGGGACCCTGGCCACTCAAAGGGT
GGAGGGCACAGGTGTGACCACCCCTGGCTGCAGAGTCAGTGCCCTGGGAGGAAAGAGGGT
CCCACCAAACCCCTTTTTAATCACCTTCCCCCAGGCCAAGGCACCCCGGGCCCTGGGATC
TGAAACCAAACACGCCTCCACTCCCTTCGGCTCCCGCTTCTCGCTGGCCTGGGCTCTCTC
CTGGGAACGGGGCCCTCTGCCCTCCCACCCCTGCTGGCAGGAAGCAGGGCCAAGGGTGGG
GTATTGTGGGACCCGGCTAGAGACCCTGGAGGGGCCAGGGGCCCCGAGGCCTCCACAGCC
CCTGCTTGAGGGGTTCCTTTGCTGCTGGGTTGGGGGAGCAGTGGCAGGGGAGGCCCTGCC
TGTCCCCAGAGGCAGAGCGAGGAGGCCGTGCATGTGGCGCGGGCGTGTGTGTGCATGTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               132-514, - strand, RNAz p=0.999583

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               132-514, - strand, RNAz p=0.999583

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               229-350, - strand, RNAmicro p=0.99999
               

               
               488-568, + strand, RNAmicro p=0.944889

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               229-350, - strand, RNAmicro p=0.99999
               

               
               488-568, + strand, RNAmicro p=0.944889

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr29 (31452884-31453590)
               

               
               1-660, gnl|Hg17|chr11 (61269082-61269805)
               

               
               1-660, gnl|Mm7|chr19 (9927249-9926542)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr29 (31452884-31453590)
               

               
               1-660, gnl|Hg17|chr11 (61269082-61269805)
               

               
               1-660, gnl|Mm7|chr19 (9927249-9926542)

	229-350, - strand, RNAmicro p=0.99999
	488-568, + strand, RNAmicro p=0.944889

	1-660, gnl\|bosTau2\|chr29 (31452884-31453590)
	1-660, gnl\|Hg17\|chr11 (61269082-61269805)
	1-660, gnl\|Mm7\|chr19 (9927249-9926542)