Non-Coding RNA Search

Ss1.1-Pig2-45A06.5

Sequence:


               
               ATAGGTTGGGGAGCCTGCACTGTGCTGGGTCCCCCCAGAATTCCTATGCTGGGATGTGGC
ACAGACGCAGGACAGCGGGTCCCCCACCATGGGGGTGGGAAGGGCCTCACAGCTCGTTGT
GGAGCGGCCGGCACTGAGGAGAGAGCTTCTCCTCCAGCACCCCGTCAGGGGCACACACCC
AGGGGTCGTGGGTGTCCCACTGCCACTTGGCCAGCTGGGTCTGAAGCAGCTCCAGAACCT
GGGCATAGCGCGGGTCGGCAGCCAGGTTCTGGGTCTCGTGGGGATCCCGGCTCCGGTCAT
AGAGCTCCCAGCGCTCCCGGTAGTAGTAGCGGTGCAGGTCCTTGTACCAGCCCGTGGGCT
GGCCAGCCACCGTGCGATTCAGGAGATCCTGGAAGGTGGGCGAGACGTAGAAGTCCTGGT
CGATGGGAAAGGGCAGCCTGAAGTGGAGGTTGTGCACGAGGCGGAAGTCCTGGTGCTGCA
CAGAGCGCATGGGGTAGGACATGGTGACCTCGTGGTGGCTCTGGCTGCCGAAGACCGTGG
TCCAGAGGGATTCCGCCTCCAGCGCTGGCAGGAGGGACCGGCCGGTGAGCTGGACAGTCT
TGGAGCCAAAGATGGCATAGTGGGGGTAGGGGATGGAGAACCAGTCCAAGACGGTGGGCG
TGAGGTCTAGGAGGCTCACGTAGGCCTCGCTGACCTGGCCCCAGCGTTGCGGGTGCTCTG
GGGACGACACCAGCAAGGGCTCAGCGGCGCCCGGCCAGTACAGGTTGGTCCTGCCGCTGG
GGAAGGGGACCCCGTTGTCAGACGTGAAGATGACCAGGGTGTCATTCAGGACGCCTGCTC
CACGCAGCTCCTGGAGCACGAGTCCAATCCCTTGGTCCATCCGGCCGATGGTGGTGTACT
GAGCGGCCAGGTCAGCTCGGGCTGCTGGGGTGTCAGGGACGAAGTAAGGCACCTGGGGTG
GGGAAGGCAGGTGGAAATCAAGGTCAGAACAGACAGGTTTGGGGGCCAGAATGGCTGGCC
CTCAAATTGGGGTTGCAGGCACCAGCCTCCCCGCCAGGGCCTGAAATCATCAGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGGTTGGGGAGCCTGCACTGTGCTGGGTCCCCCCAGAATTCCTATGCTGGGATGTGGC
ACAGACGCAGGACAGCGGGTCCCCCACCATGGGGGTGGGAAGGGCCTCACAGCTCGTTGT
GGAGCGGCCGGCACTGAGGAGAGAGCTTCTCCTCCAGCACCCCGTCAGGGGCACACACCC
AGGGGTCGTGGGTGTCCCACTGCCACTTGGCCAGCTGGGTCTGAAGCAGCTCCAGAACCT
GGGCATAGCGCGGGTCGGCAGCCAGGTTCTGGGTCTCGTGGGGATCCCGGCTCCGGTCAT
AGAGCTCCCAGCGCTCCCGGTAGTAGTAGCGGTGCAGGTCCTTGTACCAGCCCGTGGGCT
GGCCAGCCACCGTGCGATTCAGGAGATCCTGGAAGGTGGGCGAGACGTAGAAGTCCTGGT
CGATGGGAAAGGGCAGCCTGAAGTGGAGGTTGTGCACGAGGCGGAAGTCCTGGTGCTGCA
CAGAGCGCATGGGGTAGGACATGGTGACCTCGTGGTGGCTCTGGCTGCCGAAGACCGTGG
TCCAGAGGGATTCCGCCTCCAGCGCTGGCAGGAGGGACCGGCCGGTGAGCTGGACAGTCT
TGGAGCCAAAGATGGCATAGTGGGGGTAGGGGATGGAGAACCAGTCCAAGACGGTGGGCG
TGAGGTCTAGGAGGCTCACGTAGGCCTCGCTGACCTGGCCCCAGCGTTGCGGGTGCTCTG
GGGACGACACCAGCAAGGGCTCAGCGGCGCCCGGCCAGTACAGGTTGGTCCTGCCGCTGG
GGAAGGGGACCCCGTTGTCAGACGTGAAGATGACCAGGGTGTCATTCAGGACGCCTGCTC
CACGCAGCTCCTGGAGCACGAGTCCAATCCCTTGGTCCATCCGGCCGATGGTGGTGTACT
GAGCGGCCAGGTCAGCTCGGGCTGCTGGGGTGTCAGGGACGAAGTAAGGCACCTGGGGTG
GGGAAGGCAGGTGGAAATCAAGGTCAGAACAGACAGGTTTGGGGGCCAGAATGGCTGGCC
CTCAAATTGGGGTTGCAGGCACCAGCCTCCCCGCCAGGGCCTGAAATCATCAGCGGCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50978818|ref|NP_001003114.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50978818|ref|NP_001003114.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               498-668, - strand, RNAz p=0.979242

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               498-668, - strand, RNAz p=0.979242

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-668, gnl|bosTau2|chr19 (47275191-47275858)
               

               
               3-668, gnl|Hg17|chr17 (75798520-75799407)
               

               
               3-668, gnl|Mm7|chr11 (119455066-119455884)
               


               
               870-1069, gnl|bosTau2|chr19 (47277339-47277548)
               

               
               870-1069, gnl|Mm7|chr11 (119458584-119458782)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-668, gnl|bosTau2|chr19 (47275191-47275858)
               

               
               3-668, gnl|Hg17|chr17 (75798520-75799407)
               

               
               3-668, gnl|Mm7|chr11 (119455066-119455884)
               


               
               870-1069, gnl|bosTau2|chr19 (47277339-47277548)
               

               
               870-1069, gnl|Mm7|chr11 (119458584-119458782)

	3-668, gnl\|bosTau2\|chr19 (47275191-47275858)
	3-668, gnl\|Hg17\|chr17 (75798520-75799407)
	3-668, gnl\|Mm7\|chr11 (119455066-119455884)

	870-1069, gnl\|bosTau2\|chr19 (47277339-47277548)
	870-1069, gnl\|Mm7\|chr11 (119458584-119458782)