Non-Coding RNA Search

Ss1.1-Pig2-46G02.5

Sequence:


               
               ATCCCAAGGCCTGAGAAAGTCCGTTCTCCAGTACCTGCTGCTGATCGTCTGCCTCAGCCA
GCAAGAAGCACCATGAAATTGGAATTCANCCGAGAAAAAACTACAACAGCTTTGTGCTGC
AGAACCTGAACAAACAGAGGAAACGCAAAGAATACTGGGACATGGCTCTGACTGTGGACC
ACCACGTCTTCTTTGCACATCGCAACGTGCTGGCTGCCGTCTCTCCGCTGGTGAAGAGCC
TCATCTCCAACCACGACATGAAAACCACCGATGAGCTCTTTATCACCATCGACCCCAACT
ACCTGAGTCCGACCACGGTGGACCACCTCCTAGACTACTTTTACAGCGGCAAGGTGGTGA
TCTCCGAGCAGAACGTGGAGGAGCTGCTTCGCGGGGCCCAGTATTTCAACACCCCCCGCC
TTCGAATTCACTGCAATGACTTCCTGATCAAGTCCATCCGCCGTGCCAACTGCTTGCGCT
ACCTCTTCTTGGCTGAGTTGTTTGAACTCAAAGAGGTCTCGGACTTGGCCTACTCTGGCA
TTCGCGACAACTTCCACTACTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCCAAGGCCTGAGAAAGTCCGTTCTCCAGTACCTGCTGCTGATCGTCTGCCTCAGCCA
GCAAGAAGCACCATGAAATTGGAATTCANCCGAGAAAAAACTACAACAGCTTTGTGCTGC
AGAACCTGAACAAACAGAGGAAACGCAAAGAATACTGGGACATGGCTCTGACTGTGGACC
ACCACGTCTTCTTTGCACATCGCAACGTGCTGGCTGCCGTCTCTCCGCTGGTGAAGAGCC
TCATCTCCAACCACGACATGAAAACCACCGATGAGCTCTTTATCACCATCGACCCCAACT
ACCTGAGTCCGACCACGGTGGACCACCTCCTAGACTACTTTTACAGCGGCAAGGTGGTGA
TCTCCGAGCAGAACGTGGAGGAGCTGCTTCGCGGGGCCCAGTATTTCAACACCCCCCGCC
TTCGAATTCACTGCAATGACTTCCTGATCAAGTCCATCCGCCGTGCCAACTGCTTGCGCT
ACCTCTTCTTGGCTGAGTTGTTTGAACTCAAAGAGGTCTCGGACTTGGCCTACTCTGGCA
TTCGCGACAACTTCCACTACTGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               159-278, - strand, RNAz p=0.713834
               

               
               439-558, - strand, RNAz p=0.555328

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-278, - strand, RNAz p=0.713834
               

               
               439-558, - strand, RNAz p=0.555328

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-564, gnl|bosTau2|chr8 (31841800-31841238)
               

               
               1-564, gnl|Hg17|chr9 (36159431-36159989)
               

               
               1-564, gnl|Mm7|chr4 (43997336-43997898)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr8 (31841800-31841238)
               

               
               1-564, gnl|Hg17|chr9 (36159431-36159989)
               

               
               1-564, gnl|Mm7|chr4 (43997336-43997898)

	159-278, - strand, RNAz p=0.713834
	439-558, - strand, RNAz p=0.555328

	1-564, gnl\|bosTau2\|chr8 (31841800-31841238)
	1-564, gnl\|Hg17\|chr9 (36159431-36159989)
	1-564, gnl\|Mm7\|chr4 (43997336-43997898)