Ss1.1-Pig2-46O20.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCATGGGCTCTGGCTCCTGCTCTGCCCTCATCAAGCTGCTGCCTGGCCACAGTGACCTC CTGGTTGCCCACAACACCTGGCACTCCTACCAGTACATGCTGCGCATCATAAAGAAGTAC TGGTTCCAGTTCAGAGAAGGGCCCCACGAAGACCCCATCCCGGCTCCTGGCAACAGAGTG ATCTTCTCTTCCTACCCTGGTACCATTTTCTCCTGTGATGACTTCTACATCCTGGGCAGC GGACTGGTGACCCTGGAGACCACCATTGGTAATAAGAACCCGGCCCTGTGGAAGTACGTG CAGCCCAAGGGCTGTGTGCTGGAGTGGATACGCAACATCGTGGCCAACCGCCTGGCCTTA GATGGGGACTCCTGGACTGATATCTTCAAGAGGTACAACAGTGGCACGTACAACAACCAG TGGATGATCGTGGACTACAAGGCCTTCTTCCCCGGCGGGCCCAGCCCTGGGCGGAGGGTG CTCACCGTTCTGGAGCAGATCCCGGGCATGGTGGTGGTGGCTGACAAGACCTCGGAGCTC TACCAGAAGACCTACTGGGCCAGCTACAACATCCCGTCCTTTGAGTCCGTGTTCAACACC AGCGGGCTGCCGGCCCTCGTGGCCCACTACGGGGACTGGTTCTCCTACAACGGGAGCCCC CGGGCCCAGATCTTCCGGCGGAACCAGTCACTGGTGCATGATCTGGACTCCATGATCCGG CTTATGAGATACAACGACTTCCTGCACGACCCCCTGTCACTGTGCAAAGCTTGCAAGCCC CAGGCCAACGGCGAGAACGCCATCTCGGCCCGATCCGACCTCAACCCATCCAATGGCTCC TACCCCTTCCAGGCCCTGCAGCAGCGCTCCCACGGGGGCATCGACGTGAAGGTGACCAGC ATGGCCCTGGCCAGGGTGTTTGGCCTCCTGGCGGCCAGTGGACCCACGTGGGACCAGCTG CCTCCATTCCAGTGGAGCACCTCTCCCTTCAGCCACCTGCTGCACATGGGCCAGCCTGAC CTCTGGAAGTTCTCTCCTATCGAGGTCTCATGGGACTGAGGCTCCAGCTCTGCTCTGCTG GCTTCTGTCCTTGCTGACCCCAGCAGGGACCGCCCAACTGACTGCCACCCTGACCTCCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCATGGGCTCTGGCTCCTGCTCTGCCCTCATCAAGCTGCTGCCTGGCCACAGTGACCTC CTGGTTGCCCACAACACCTGGCACTCCTACCAGTACATGCTGCGCATCATAAAGAAGTAC TGGTTCCAGTTCAGAGAAGGGCCCCACGAAGACCCCATCCCGGCTCCTGGCAACAGAGTG ATCTTCTCTTCCTACCCTGGTACCATTTTCTCCTGTGATGACTTCTACATCCTGGGCAGC GGACTGGTGACCCTGGAGACCACCATTGGTAATAAGAACCCGGCCCTGTGGAAGTACGTG CAGCCCAAGGGCTGTGTGCTGGAGTGGATACGCAACATCGTGGCCAACCGCCTGGCCTTA GATGGGGACTCCTGGACTGATATCTTCAAGAGGTACAACAGTGGCACGTACAACAACCAG TGGATGATCGTGGACTACAAGGCCTTCTTCCCCGGCGGGCCCAGCCCTGGGCGGAGGGTG CTCACCGTTCTGGAGCAGATCCCGGGCATGGTGGTGGTGGCTGACAAGACCTCGGAGCTC TACCAGAAGACCTACTGGGCCAGCTACAACATCCCGTCCTTTGAGTCCGTGTTCAACACC AGCGGGCTGCCGGCCCTCGTGGCCCACTACGGGGACTGGTTCTCCTACAACGGGAGCCCC CGGGCCCAGATCTTCCGGCGGAACCAGTCACTGGTGCATGATCTGGACTCCATGATCCGG CTTATGAGATACAACGACTTCCTGCACGACCCCCTGTCACTGTGCAAAGCTTGCAAGCCC CAGGCCAACGGCGAGAACGCCATCTCGGCCCGATCCGACCTCAACCCATCCAATGGCTCC TACCCCTTCCAGGCCCTGCAGCAGCGCTCCCACGGGGGCATCGACGTGAAGGTGACCAGC ATGGCCCTGGCCAGGGTGTTTGGCCTCCTGGCGGCCAGTGGACCCACGTGGGACCAGCTG CCTCCATTCCAGTGGAGCACCTCTCCCTTCAGCCACCTGCTGCACATGGGCCAGCCTGAC CTCTGGAAGTTCTCTCCTATCGAGGTCTCATGGGACTGAGGCTCCAGCTCTGCTCTGCTG GCTTCTGTCCTTGCTGACCCCAGCAGGGACCGCCCAACTGACTGCCACCCTGACCTCCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 890-1084, - strand, RNAz p=0.781096 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 890-1084, - strand, RNAz p=0.781096 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-146, gnl|bosTau2|chr17 (37980971-37981116) | |
| 1-146, gnl|canFam2|chr26 (13733483-13733697) | |
| 1-146, gnl|danRer3|chr9 (4037888-4038100) | |
| 1-146, gnl|echTel1|scaffold_233256 (5895-5681) | |
| 1-146, gnl|fr1|chrUn (1576319-1576131) | |
| 1-146, gnl|galGal2|chrUn (79087314-79087100) | |
| 1-146, gnl|hg17|chr12 (112275315-112275529) | |
| 1-146, gnl|Hg17|chr12 (112275385-112275530) | |
| 1-146, gnl|loxAfr1|scaffold_26437 (7234-7017) | |
| 1-146, gnl|mm7|chr5 (119726870-119726656) | |
| 1-146, gnl|Mm7|chr5 (119726798-119726653) | |
| 1-146, gnl|monDom2|scaffold_110 (1741157-1741371) | |
| 1-146, gnl|oryCun1|scaffold_83911 (3705-3919) | |
| 1-146, gnl|panTro1|chr10 (114981822-114982036) | |
| 1-146, gnl|rheMac2|chr11 (114290167-114290381) | |
| 1-146, gnl|rn3|chr12 (37135994-37136208) | |
| 1-146, gnl|tetNig1|chr12 (6132893-6132687) | |
| 1-146, gnl|xenTro1|scaffold_891 (113777-113991) | |
| 246-409, gnl|bosTau2|chr17 (37985399-37985562) | |
| 246-409, gnl|canFam2|chr26 (13741243-13741417) | |
| 246-409, gnl|danRer3|chr9 (4040344-4040516) | |
| 246-409, gnl|echTel1|scaffold_233256 (3075-2901) | |
| 246-409, gnl|fr1|chrUn (1575736-1575567) | |
| 246-409, gnl|galGal2|chrUn (79086884-79086704) | |
| 246-409, gnl|hg17|chr12 (112284623-112284797) | |
| 246-409, gnl|Hg17|chr12 (112284629-112284792) | |
| 246-409, gnl|mm7|chr5 (119722565-119722391) | |
| 246-409, gnl|Mm7|chr5 (119722557-119722394) | |
| 246-409, gnl|monDom2|scaffold_110 (1743273-1743442) | |
| 246-409, gnl|oryCun1|scaffold_204384 (32438-32612) | |
| 246-409, gnl|panTro1|chr10 (114991199-114991373) | |
| 246-409, gnl|rheMac2|chr11 (114298587-114298761) | |
| 246-409, gnl|rn3|chr12 (37140006-37140180) | |
| 246-409, gnl|tetNig1|chr12 (6132314-6132145) | |
| 246-409, gnl|xenTro1|scaffold_891 (117634-117808) | |
| 576-728, gnl|bosTau2|chr17 (37987404-37987556) | |
| 576-728, gnl|canFam2|chr26 (13743071-13743230) | |
| 576-728, gnl|danRer3|chr9 (4042110-4042269) | |
| 576-728, gnl|echTel1|scaffold_233256 (1290-1132) | |
| 576-728, gnl|fr1|chrUn (1574669-1574512) | |
| 576-728, gnl|galGal2|chr15 (12366517-12366358) | |
| 576-728, gnl|hg17|chr12 (112287460-112287619) | |
| 576-728, gnl|Hg17|chr12 (112287462-112287614) | |
| 576-728, gnl|loxAfr1|scaffold_26437 (454-295) | |
| 576-728, gnl|mm7|chr5 (119720790-119720631) | |
| 576-728, gnl|Mm7|chr5 (119720786-119720634) | |
| 576-728, gnl|monDom2|scaffold_110 (1745609-1745768) | |
| 576-728, gnl|panTro1|chr10 (114993886-114994045) | |
| 576-728, gnl|rheMac2|chr11 (114301074-114301233) | |
| 576-728, gnl|rn3|chr12 (37141708-37141867) | |
| 576-728, gnl|tetNig1|chr12 (6131277-6131135) | |
| 576-728, gnl|xenTro1|scaffold_891 (119811-119970) | |
| 890-1138, gnl|bosTau2|chr17 (37988329-37988576) | |
| 890-1138, gnl|Hg17|chr12 (112288982-112289236) | |
| 890-1138, gnl|Mm7|chr5 (119719826-119719583) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-146, gnl|bosTau2|chr17 (37980971-37981116) | |
| 1-146, gnl|canFam2|chr26 (13733483-13733697) | |
| 1-146, gnl|danRer3|chr9 (4037888-4038100) | |
| 1-146, gnl|echTel1|scaffold_233256 (5895-5681) | |
| 1-146, gnl|fr1|chrUn (1576319-1576131) | |
| 1-146, gnl|galGal2|chrUn (79087314-79087100) | |
| 1-146, gnl|hg17|chr12 (112275315-112275529) | |
| 1-146, gnl|Hg17|chr12 (112275385-112275530) | |
| 1-146, gnl|loxAfr1|scaffold_26437 (7234-7017) | |
| 1-146, gnl|mm7|chr5 (119726870-119726656) | |
| 1-146, gnl|Mm7|chr5 (119726798-119726653) | |
| 1-146, gnl|monDom2|scaffold_110 (1741157-1741371) | |
| 1-146, gnl|oryCun1|scaffold_83911 (3705-3919) | |
| 1-146, gnl|panTro1|chr10 (114981822-114982036) | |
| 1-146, gnl|rheMac2|chr11 (114290167-114290381) | |
| 1-146, gnl|rn3|chr12 (37135994-37136208) | |
| 1-146, gnl|tetNig1|chr12 (6132893-6132687) | |
| 1-146, gnl|xenTro1|scaffold_891 (113777-113991) | |
| 246-409, gnl|bosTau2|chr17 (37985399-37985562) | |
| 246-409, gnl|canFam2|chr26 (13741243-13741417) | |
| 246-409, gnl|danRer3|chr9 (4040344-4040516) | |
| 246-409, gnl|echTel1|scaffold_233256 (3075-2901) | |
| 246-409, gnl|fr1|chrUn (1575736-1575567) | |
| 246-409, gnl|galGal2|chrUn (79086884-79086704) | |
| 246-409, gnl|hg17|chr12 (112284623-112284797) | |
| 246-409, gnl|Hg17|chr12 (112284629-112284792) | |
| 246-409, gnl|mm7|chr5 (119722565-119722391) | |
| 246-409, gnl|Mm7|chr5 (119722557-119722394) | |
| 246-409, gnl|monDom2|scaffold_110 (1743273-1743442) | |
| 246-409, gnl|oryCun1|scaffold_204384 (32438-32612) | |
| 246-409, gnl|panTro1|chr10 (114991199-114991373) | |
| 246-409, gnl|rheMac2|chr11 (114298587-114298761) | |
| 246-409, gnl|rn3|chr12 (37140006-37140180) | |
| 246-409, gnl|tetNig1|chr12 (6132314-6132145) | |
| 246-409, gnl|xenTro1|scaffold_891 (117634-117808) | |
| 576-728, gnl|bosTau2|chr17 (37987404-37987556) | |
| 576-728, gnl|canFam2|chr26 (13743071-13743230) | |
| 576-728, gnl|danRer3|chr9 (4042110-4042269) | |
| 576-728, gnl|echTel1|scaffold_233256 (1290-1132) | |
| 576-728, gnl|fr1|chrUn (1574669-1574512) | |
| 576-728, gnl|galGal2|chr15 (12366517-12366358) | |
| 576-728, gnl|hg17|chr12 (112287460-112287619) | |
| 576-728, gnl|Hg17|chr12 (112287462-112287614) | |
| 576-728, gnl|loxAfr1|scaffold_26437 (454-295) | |
| 576-728, gnl|mm7|chr5 (119720790-119720631) | |
| 576-728, gnl|Mm7|chr5 (119720786-119720634) | |
| 576-728, gnl|monDom2|scaffold_110 (1745609-1745768) | |
| 576-728, gnl|panTro1|chr10 (114993886-114994045) | |
| 576-728, gnl|rheMac2|chr11 (114301074-114301233) | |
| 576-728, gnl|rn3|chr12 (37141708-37141867) | |
| 576-728, gnl|tetNig1|chr12 (6131277-6131135) | |
| 576-728, gnl|xenTro1|scaffold_891 (119811-119970) | |
| 890-1138, gnl|bosTau2|chr17 (37988329-37988576) | |
| 890-1138, gnl|Hg17|chr12 (112288982-112289236) | |
| 890-1138, gnl|Mm7|chr5 (119719826-119719583) |