Non-Coding RNA Search

Ss1.1-Pig2-47M04.5

Sequence:


               
               ACTGTGAATTGCCTCGTGATCTCATAATTCCTAGGACTGGGCCCTCATATTGTCTTATCC
AGCTATGTGTCTCCATTATCTGGCGGAAGATCTTACTGAAGTAGATGATAAATAAAGGAA
AAAAATGTTGGTTAAGGCGAACCAATGAAAAACAGAATACGGCTTGATAGCTTATATTTA
TATGTTTGCGTGTGCATAGCATGCTAAGCTTTGTGATTTTGGCTCACTTATTCCATTACC
TGGAATTTAGTGTGGCCCTTAGGCAGAATTCACTGCGGAATGTCAAAGCTTTGATTCAAG
CTGAACTGCTGGGGGAGGTGAAGGGAGTATGAAGAACATTTTCAGACTTTGTTTCTCAGT
TTCTATTATAGATTATTGCAAATCCCATATACTGTAGTCTAAGTGGGGTTTTACTGTATC
TGAAGGTGTTTTGACTTGAAACTCATCAACTTAGAATGCTATGAAAAATTTCTGACTTTA
GTGCCTCTAATCTCGTCTCGTGTCACGTCACCAAAACAGGTTTAAATATTTTTCATGTTA
TTCCTGTAGTCAAGAGCCACTATAGATAGCCATTATTTAAATAAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGTGAATTGCCTCGTGATCTCATAATTCCTAGGACTGGGCCCTCATATTGTCTTATCC
AGCTATGTGTCTCCATTATCTGGCGGAAGATCTTACTGAAGTAGATGATAAATAAAGGAA
AAAAATGTTGGTTAAGGCGAACCAATGAAAAACAGAATACGGCTTGATAGCTTATATTTA
TATGTTTGCGTGTGCATAGCATGCTAAGCTTTGTGATTTTGGCTCACTTATTCCATTACC
TGGAATTTAGTGTGGCCCTTAGGCAGAATTCACTGCGGAATGTCAAAGCTTTGATTCAAG
CTGAACTGCTGGGGGAGGTGAAGGGAGTATGAAGAACATTTTCAGACTTTGTTTCTCAGT
TTCTATTATAGATTATTGCAAATCCCATATACTGTAGTCTAAGTGGGGTTTTACTGTATC
TGAAGGTGTTTTGACTTGAAACTCATCAACTTAGAATGCTATGAAAAATTTCTGACTTTA
GTGCCTCTAATCTCGTCTCGTGTCACGTCACCAAAACAGGTTTAAATATTTTTCATGTTA
TTCCTGTAGTCAAGAGCCACTATAGATAGCCATTATTTAAATAAAATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               201-292, - strand, RNAz p=0.934589

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-292, - strand, RNAz p=0.934589

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-345, gnl|bosTau2|chr15 (26854244-26853909)
               

               
               1-345, gnl|canFam2|chr21 (37198205-37198560)
               

               
               1-345, gnl|dasNov1|scaffold_1513 (103575-103144)
               

               
               1-345, gnl|echTel1|scaffold_309040 (15136-14766)
               

               
               1-345, gnl|hg17|chr11 (10830031-10830470)
               

               
               1-345, gnl|Hg17|chr11 (10830467-10830096)
               

               
               1-345, gnl|loxAfr1|scaffold_3868 (91788-92222)
               

               
               1-345, gnl|oryCun1|scaffold_199582 (137036-137412)
               

               
               1-345, gnl|panTro1|chr9 (11065388-11065827)
               

               
               1-345, gnl|rheMac2|chr14 (61094287-61093826)
               

               
               1-345, gnl|rn3|chr1 (168994647-168995054)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-345, gnl|bosTau2|chr15 (26854244-26853909)
               

               
               1-345, gnl|canFam2|chr21 (37198205-37198560)
               

               
               1-345, gnl|dasNov1|scaffold_1513 (103575-103144)
               

               
               1-345, gnl|echTel1|scaffold_309040 (15136-14766)
               

               
               1-345, gnl|hg17|chr11 (10830031-10830470)
               

               
               1-345, gnl|Hg17|chr11 (10830467-10830096)
               

               
               1-345, gnl|loxAfr1|scaffold_3868 (91788-92222)
               

               
               1-345, gnl|oryCun1|scaffold_199582 (137036-137412)
               

               
               1-345, gnl|panTro1|chr9 (11065388-11065827)
               

               
               1-345, gnl|rheMac2|chr14 (61094287-61093826)
               

               
               1-345, gnl|rn3|chr1 (168994647-168995054)

	1-345, gnl\|bosTau2\|chr15 (26854244-26853909)
	1-345, gnl\|canFam2\|chr21 (37198205-37198560)
	1-345, gnl\|dasNov1\|scaffold_1513 (103575-103144)
	1-345, gnl\|echTel1\|scaffold_309040 (15136-14766)
	1-345, gnl\|hg17\|chr11 (10830031-10830470)
	1-345, gnl\|Hg17\|chr11 (10830467-10830096)
	1-345, gnl\|loxAfr1\|scaffold_3868 (91788-92222)
	1-345, gnl\|oryCun1\|scaffold_199582 (137036-137412)
	1-345, gnl\|panTro1\|chr9 (11065388-11065827)
	1-345, gnl\|rheMac2\|chr14 (61094287-61093826)
	1-345, gnl\|rn3\|chr1 (168994647-168995054)