Ss1.1-Pig2-48H22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAGGTAAACAGTTTCTTGGTAAAATAATAGCCCTAAAAAATATCCCTAAATACTAATG CTGACCTTGGCGTTTTATTGCCAAGACCTGCATAAGGGGGAGAGCTTCCTGTCTAAGCTT TAGTTCTGCTCTTTAATACTGTTATTCTTTTTTAAATGTCAAGCTTTAAGTTTAGAGATT TCCGCTAAACCCCTATGAGCTTCTAGGGTGGCTAAATTTGTTAGTATATTCCATTGTCTC TGGTTATGCTGTTGCTTTGGCATCATTTAGACATTTTTTGTTAATAAATCTGAATTCAGG GTTACTCACAGGGCCACTGACAAGGCCATCACGTCACTGATTTTGGTGAGAGAGGGGATT TTCTCTTTTATTTTCATCATTTCATTGCAGTATTCCAAGGCTTGTTGTAGGCAGGAGTGC ATCTCCCAGAGATTTAACCTGCTGGTGAAGGGACAAGCTCCAATGCATTACTTATATACC TGTGGGGCCAGAATCTGTTTACCAACAATCCCCTCCCCTTCTTTTAGGTCTCTACCCACC AAGAGCCAAGCTGGTAATACAGAGGCACCTCTCATCATTGACTGATAATGAGCAAGCTGA CATCTTTGAACGAGTCCAGAAAATGAAGCCCATCAATGACCAGGAGGAGAATGAACTTGT CATTTTACATCTGAGGCAGCTCTGTGAAGCCAAGCAGAGGACACACATTCACATTGGGGA AGGCCCATCGACTATTTCCAGTAGTACAATCCCGGAAAATTCGACGAGCAGTGGAAGGTT CAAACTTGACATCCTGAAAAATAAAGCTAAGAGATCCTTAACTAGCTCCCTGGAAAACAT CTTCTCAAGGGGAGCTAACAGAATGAGAGGCCGGCTTGGAAGTATGGACAGCTTTGAACG GTCCAACAGTCTTGCTTCAGAGAAGGACTACTCGCCCGGAGACTCTCCGCCGGGGACCCC GCCGGCTTCCCCACTGTCCGCCGCTTGGCAGACGTTCCCTGAAGAGGATTCCGACTCCCC GCAGTTTCGAAGACGGGCCCACACGTTCAGCCACCCACCTTCCAGCACGAAGAGAAAGCT GAATTTCCAGGATGGGAAGGCTCATGGGGTCCGCTCCCCTCTGCTGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAGGTAAACAGTTTCTTGGTAAAATAATAGCCCTAAAAAATATCCCTAAATACTAATG CTGACCTTGGCGTTTTATTGCCAAGACCTGCATAAGGGGGAGAGCTTCCTGTCTAAGCTT TAGTTCTGCTCTTTAATACTGTTATTCTTTTTTAAATGTCAAGCTTTAAGTTTAGAGATT TCCGCTAAACCCCTATGAGCTTCTAGGGTGGCTAAATTTGTTAGTATATTCCATTGTCTC TGGTTATGCTGTTGCTTTGGCATCATTTAGACATTTTTTGTTAATAAATCTGAATTCAGG GTTACTCACAGGGCCACTGACAAGGCCATCACGTCACTGATTTTGGTGAGAGAGGGGATT TTCTCTTTTATTTTCATCATTTCATTGCAGTATTCCAAGGCTTGTTGTAGGCAGGAGTGC ATCTCCCAGAGATTTAACCTGCTGGTGAAGGGACAAGCTCCAATGCATTACTTATATACC TGTGGGGCCAGAATCTGTTTACCAACAATCCCCTCCCCTTCTTTTAGGTCTCTACCCACC AAGAGCCAAGCTGGTAATACAGAGGCACCTCTCATCATTGACTGATAATGAGCAAGCTGA CATCTTTGAACGAGTCCAGAAAATGAAGCCCATCAATGACCAGGAGGAGAATGAACTTGT CATTTTACATCTGAGGCAGCTCTGTGAAGCCAAGCAGAGGACACACATTCACATTGGGGA AGGCCCATCGACTATTTCCAGTAGTACAATCCCGGAAAATTCGACGAGCAGTGGAAGGTT CAAACTTGACATCCTGAAAAATAAAGCTAAGAGATCCTTAACTAGCTCCCTGGAAAACAT CTTCTCAAGGGGAGCTAACAGAATGAGAGGCCGGCTTGGAAGTATGGACAGCTTTGAACG GTCCAACAGTCTTGCTTCAGAGAAGGACTACTCGCCCGGAGACTCTCCGCCGGGGACCCC GCCGGCTTCCCCACTGTCCGCCGCTTGGCAGACGTTCCCTGAAGAGGATTCCGACTCCCC GCAGTTTCGAAGACGGGCCCACACGTTCAGCCACCCACCTTCCAGCACGAAGAGAAAGCT GAATTTCCAGGATGGGAAGGCTCATGGGGTCCGCTCCCCTCTGCTGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 470-588, - strand, RNAz p=0.51226 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 470-588, - strand, RNAz p=0.51226 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 7-242, gnl|bosTau2|chr12 (27116453-27116709) | |
| 7-242, gnl|Hg17|chr13 (74814684-74814391) | |
| 470-619, gnl|bosTau2|chr12 (27117920-27118069) | |
| 470-619, gnl|canFam2|chr22 (32106106-32106242) | |
| 470-619, gnl|dasNov1|scaffold_133272 (30-173) | |
| 470-619, gnl|echTel1|scaffold_314398 (38743-38614) | |
| 470-619, gnl|fr1|chrUn (235614316-235614185) | |
| 470-619, gnl|galGal2|chr1 (151858090-151857986) | |
| 470-619, gnl|hg17|chr13 (74813610-74813746) | |
| 470-619, gnl|Hg17|chr13 (74813774-74813633) | |
| 470-619, gnl|loxAfr1|scaffold_47044 (5042-4913) | |
| 470-619, gnl|mm7|chr14 (95904463-95904592) | |
| 470-619, gnl|monDom2|scaffold_8 (12224984-12225115) | |
| 470-619, gnl|oryCun1|scaffold_175153 (13138-13004) | |
| 470-619, gnl|panTro1|chr14 (57375652-57375788) | |
| 470-619, gnl|rheMac2|chr17 (55787262-55787398) | |
| 470-619, gnl|rn3|chr15_random (1227618-1227748) | |
| 470-619, gnl|tetNig1|chr2 (8094407-8094518) | |
| 470-619, gnl|xenTro1|scaffold_107 (359749-359640) | |
| 725-851, gnl|bosTau2|chr12 (27122553-27122679) | |
| 725-851, gnl|Hg17|chr13 (74809183-74809057) | |
| 725-851, gnl|Mm7|chr14 (95902172-95902046) | |
| 924-1128, gnl|bosTau2|chr12 (27135717-27135921) | |
| 924-1128, gnl|Hg17|chr13 (74798562-74798358) | |
| 924-1128, gnl|Mm7|chr14 (95891874-95891670) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-242, gnl|bosTau2|chr12 (27116453-27116709) | |
| 7-242, gnl|Hg17|chr13 (74814684-74814391) | |
| 470-619, gnl|bosTau2|chr12 (27117920-27118069) | |
| 470-619, gnl|canFam2|chr22 (32106106-32106242) | |
| 470-619, gnl|dasNov1|scaffold_133272 (30-173) | |
| 470-619, gnl|echTel1|scaffold_314398 (38743-38614) | |
| 470-619, gnl|fr1|chrUn (235614316-235614185) | |
| 470-619, gnl|galGal2|chr1 (151858090-151857986) | |
| 470-619, gnl|hg17|chr13 (74813610-74813746) | |
| 470-619, gnl|Hg17|chr13 (74813774-74813633) | |
| 470-619, gnl|loxAfr1|scaffold_47044 (5042-4913) | |
| 470-619, gnl|mm7|chr14 (95904463-95904592) | |
| 470-619, gnl|monDom2|scaffold_8 (12224984-12225115) | |
| 470-619, gnl|oryCun1|scaffold_175153 (13138-13004) | |
| 470-619, gnl|panTro1|chr14 (57375652-57375788) | |
| 470-619, gnl|rheMac2|chr17 (55787262-55787398) | |
| 470-619, gnl|rn3|chr15_random (1227618-1227748) | |
| 470-619, gnl|tetNig1|chr2 (8094407-8094518) | |
| 470-619, gnl|xenTro1|scaffold_107 (359749-359640) | |
| 725-851, gnl|bosTau2|chr12 (27122553-27122679) | |
| 725-851, gnl|Hg17|chr13 (74809183-74809057) | |
| 725-851, gnl|Mm7|chr14 (95902172-95902046) | |
| 924-1128, gnl|bosTau2|chr12 (27135717-27135921) | |
| 924-1128, gnl|Hg17|chr13 (74798562-74798358) | |
| 924-1128, gnl|Mm7|chr14 (95891874-95891670) |