Non-Coding RNA Search

Ss1.1-Pig2-48K18.5

Sequence:


               
               TGTTTTCAACACCCAAGCCCGGGCCAAAGAGATCGGGCAGAGAATCCGCAATGGGGCCAG
TAGGCCTCAGATCAAAATCTACATCGACTCACCCACCAACACCTCCATTAGTGCGGCCAG
CTTCAGCAGTCTGGTGTCACCACAGGGCAGTGATGGCGTGGCACGGGGTGTCCCTGGGAG
CATTAAGAGGACTGCCTCTGTGGAGTACAAGGGTGACAGCGGGCGTCACGCCAGCGATGA
GGCTGCCAACGGCCTATCCTCTGGGGACCCAGCAGACGGCGGCTGCCTTGAAGATGCCTG
CATTGTGCGCATCAGTGGCGACGAAGGAGGCCGGCCCCCAGAAGCCATCGACCCCCCTGC
TGGGGGCCAGGCCAGGAACGGGGCCAGCGGGGGCCCACGAGGCCAGACACCCAACCACAG
TCAGCAGGATGGGGACTCGGGGAGCCTGGGCAGCCCCTCCGCCTCCAGGGAGTCCCTGGT
GAAGGCACGGGCCGGGGCCGACGGCGGCAGCGGGGAGCCGGGCGCCAACAACAAGCTCCC
ATACAAGGCCTCGGTGGTGAAGAAGGCAGCCGCGCGCAGGAGGCGGCACCCAGACGAGGC
CTTTGACCATGAGGTCTCAGCCTTCTTTCCCGCCAACCTGGACTTCCTGTGCCTGCAGGA
GGTGTTTGACAAGCGGGCGGCTGCCAAGTTGAAAGAGCAGCTGCACAGCTATTTCGAATA
CATCCTCTATGATGTCGGGGTCTA------------CTGCTGCAGCTTCAAGTGTCTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTTCAACACCCAAGCCCGGGCCAAAGAGATCGGGCAGAGAATCCGCAATGGGGCCAG
TAGGCCTCAGATCAAAATCTACATCGACTCACCCACCAACACCTCCATTAGTGCGGCCAG
CTTCAGCAGTCTGGTGTCACCACAGGGCAGTGATGGCGTGGCACGGGGTGTCCCTGGGAG
CATTAAGAGGACTGCCTCTGTGGAGTACAAGGGTGACAGCGGGCGTCACGCCAGCGATGA
GGCTGCCAACGGCCTATCCTCTGGGGACCCAGCAGACGGCGGCTGCCTTGAAGATGCCTG
CATTGTGCGCATCAGTGGCGACGAAGGAGGCCGGCCCCCAGAAGCCATCGACCCCCCTGC
TGGGGGCCAGGCCAGGAACGGGGCCAGCGGGGGCCCACGAGGCCAGACACCCAACCACAG
TCAGCAGGATGGGGACTCGGGGAGCCTGGGCAGCCCCTCCGCCTCCAGGGAGTCCCTGGT
GAAGGCACGGGCCGGGGCCGACGGCGGCAGCGGGGAGCCGGGCGCCAACAACAAGCTCCC
ATACAAGGCCTCGGTGGTGAAGAAGGCAGCCGCGCGCAGGAGGCGGCACCCAGACGAGGC
CTTTGACCATGAGGTCTCAGCCTTCTTTCCCGCCAACCTGGACTTCCTGTGCCTGCAGGA
GGTGTTTGACAAGCGGGCGGCTGCCAAGTTGAAAGAGCAGCTGCACAGCTATTTCGAATA
CATCCTCTATGATGTCGGGGTCTA------------CTGCTGCAGCTTCAAGTGTCTCAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               41-160, - strand, RNAz p=0.652997
               

               
               518-744, + strand, RNAz p=0.946342

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.652997
               

               
               518-744, + strand, RNAz p=0.946342

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               657-732, + strand, RNAmicro p=0.999881
               

               
               154-233, + strand, RNAmicro p=0.998999
               

               
               10-145, - strand, RNAmicro p=0.951865

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               657-732, + strand, RNAmicro p=0.999881
               

               
               154-233, + strand, RNAmicro p=0.998999
               

               
               10-145, - strand, RNAmicro p=0.951865

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-751, gnl|bosTau2|chr18 (14621948-14622697)
               

               
               2-751, gnl|Hg17|chr16 (66963156-66962404)
               

               
               2-751, gnl|Mm7|chr8 (104864345-104863599)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-751, gnl|bosTau2|chr18 (14621948-14622697)
               

               
               2-751, gnl|Hg17|chr16 (66963156-66962404)
               

               
               2-751, gnl|Mm7|chr8 (104864345-104863599)

	41-160, - strand, RNAz p=0.652997
	518-744, + strand, RNAz p=0.946342

	657-732, + strand, RNAmicro p=0.999881
	154-233, + strand, RNAmicro p=0.998999
	10-145, - strand, RNAmicro p=0.951865

	2-751, gnl\|bosTau2\|chr18 (14621948-14622697)
	2-751, gnl\|Hg17\|chr16 (66963156-66962404)
	2-751, gnl\|Mm7\|chr8 (104864345-104863599)