Non-Coding RNA Search

Ss1.1-Pig2-49F12.5

Sequence:


               
               TTATTTAAAAACCTGTACACACTAAGAGTGTACTGGATTCATAGGGGAGGGTCCAGAACC
AGCCTCCTGAATCCCACTTACCCTGGTTTAGGACGGAGTCAGGGAGACCCAGTGCAGGGT
CTGAGCTGTCCTACAGTGTCAGGCACATTTCAGCAGATATCACTCTCCTGTGAGTCAGGG
CACCTTAGGCCTTGCTGTACTTCTCCCTTGTCAAGCAAGCAGCTGGACTCCTAGATTTAA
TTCTTGGAGAAAAGGGAGAATGAGCTTTGGTTTATTGGCTGCCACAGTGTTGTCTGGGTT
GGGTGGTAGCAAAAAGTGTCGTTTGATACGTTAGGGTTAGGAGAAGAGGGCGTACTGGTT
TCCTCTCTTCACTCTGAAGCCTCCCATTCAGGTTCTGGGCCGGTTTCTGTAATTGCAGCA
GAGCCACTGTCACTCTAGGAGCAAAAGAAGCTGAGGGGTTTGGGCCACACGTTGCCTCCA
GCTGCCCCCTCCACTGGTCCCAGGGAGGAGGACATAATGCCTGGAATTTGTGCTCCTGTG
CAAAGATTAAATCCTACCAGCAGGTGAGCATGCATGAAGGTTGCTCAAAATGTGCTATAA
AAGTTTCAGTGAAGAGAAAGACCCCCTCATCTCCCATCTTGGGCTTTTTAGCCTCAGGGC
TAAGTCTTCTGATAGAAGAAAAGGGACCCCAGTTCACCATCCTCTGAGGGCTTGTGGTGA
GCAGGGAGGCTCAGGGGACTTCTCTGCTGTTGGAGGTGGGGTGGGAACATTGGAATCATC
TCAAAAAAGTGGAGAAAAGTGAGAAAAATCAATTCTATGTGTACTCTTGCTTCTGTGCTG
CTTCTCTTCCCTTCATCTTTTACCATCTCATGAGTTTCACCAGGGCATTTGGGAGATCTG
GGGGTGAGGGTGAAAGCTGAGGCCTGGCACTAGAGGGGAAGCTGAGGAGGGGGATTTTTA
TGCTAAAGTTCAGGAAGAAGCAACTACCATCCCCAAGGGGCTAGACTAAATGATTCTTCC
CAGGTCTCTGTCAGTGACTTACTCCATAGGGAAGTAACACTGGAAAAAGAACTATCTTAG
CAAAAGGATAAACAATAATCAAACACTGGTGCCTGAGGCTGAGTTTGAAACTGACTCAGA
GGGACCAAGGAAATTAGGGGTCCAGTTTCCCTTCCATGATGAAGTACCCAGAACCCCTGT
CCTCACACTCCTGGGTTATCTGCTATGGAAATACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTTAAAAACCTGTACACACTAAGAGTGTACTGGATTCATAGGGGAGGGTCCAGAACC
AGCCTCCTGAATCCCACTTACCCTGGTTTAGGACGGAGTCAGGGAGACCCAGTGCAGGGT
CTGAGCTGTCCTACAGTGTCAGGCACATTTCAGCAGATATCACTCTCCTGTGAGTCAGGG
CACCTTAGGCCTTGCTGTACTTCTCCCTTGTCAAGCAAGCAGCTGGACTCCTAGATTTAA
TTCTTGGAGAAAAGGGAGAATGAGCTTTGGTTTATTGGCTGCCACAGTGTTGTCTGGGTT
GGGTGGTAGCAAAAAGTGTCGTTTGATACGTTAGGGTTAGGAGAAGAGGGCGTACTGGTT
TCCTCTCTTCACTCTGAAGCCTCCCATTCAGGTTCTGGGCCGGTTTCTGTAATTGCAGCA
GAGCCACTGTCACTCTAGGAGCAAAAGAAGCTGAGGGGTTTGGGCCACACGTTGCCTCCA
GCTGCCCCCTCCACTGGTCCCAGGGAGGAGGACATAATGCCTGGAATTTGTGCTCCTGTG
CAAAGATTAAATCCTACCAGCAGGTGAGCATGCATGAAGGTTGCTCAAAATGTGCTATAA
AAGTTTCAGTGAAGAGAAAGACCCCCTCATCTCCCATCTTGGGCTTTTTAGCCTCAGGGC
TAAGTCTTCTGATAGAAGAAAAGGGACCCCAGTTCACCATCCTCTGAGGGCTTGTGGTGA
GCAGGGAGGCTCAGGGGACTTCTCTGCTGTTGGAGGTGGGGTGGGAACATTGGAATCATC
TCAAAAAAGTGGAGAAAAGTGAGAAAAATCAATTCTATGTGTACTCTTGCTTCTGTGCTG
CTTCTCTTCCCTTCATCTTTTACCATCTCATGAGTTTCACCAGGGCATTTGGGAGATCTG
GGGGTGAGGGTGAAAGCTGAGGCCTGGCACTAGAGGGGAAGCTGAGGAGGGGGATTTTTA
TGCTAAAGTTCAGGAAGAAGCAACTACCATCCCCAAGGGGCTAGACTAAATGATTCTTCC
CAGGTCTCTGTCAGTGACTTACTCCATAGGGAAGTAACACTGGAAAAAGAACTATCTTAG
CAAAAGGATAAACAATAATCAAACACTGGTGCCTGAGGCTGAGTTTGAAACTGACTCAGA
GGGACCAAGGAAATTAGGGGTCCAGTTTCCCTTCCATGATGAAGTACCCAGAACCCCTGT
CCTCACACTCCTGGGTTATCTGCTATGGAAATACCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               43-137, - strand, RNAz p=0.757505
               

               
               692-846, - strand, RNAz p=0.999687

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-137, - strand, RNAz p=0.757505
               

               
               692-846, - strand, RNAz p=0.999687

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               69-175, - strand, RNAmicro p=0.911377

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               69-175, - strand, RNAmicro p=0.911377

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-1234, gnl|bosTau2|chr23 (20931010-20932268)
               

               
               5-1234, gnl|Hg17|chr6 (30620973-30619708)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1234, gnl|bosTau2|chr23 (20931010-20932268)
               

               
               5-1234, gnl|Hg17|chr6 (30620973-30619708)

	43-137, - strand, RNAz p=0.757505
	692-846, - strand, RNAz p=0.999687

	5-1234, gnl\|bosTau2\|chr23 (20931010-20932268)
	5-1234, gnl\|Hg17\|chr6 (30620973-30619708)