Ss1.1-Pig2-49N10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTGAAATCAAGTCCAGGTACCTGAGGTTCCTAGACAGAGCCGGACTTCAGCCCCTGTG TCCTGCGACTCCTGCTGGGGCTCTTCCAGATGTCATGGAGCTGGGTCTGTCTCCGTCTCA TCTCAGCAGCTCCCCGGAGGACCTGTACCCCGCCCCTGGGACCCCTCCTGGGACGCCCCC ATCTCCCGATGTCCCTCTGTCTGGGGAGGTAAAGAGGTCCCAGCCTCTGCCCATTCCGAC CAGCAGGAAACTTCGAGAGGAGGAGCCGCGGTCAACCTCTCTACCCGCCATCCCCAACCC CTTCCCCGAGCTCTGCAGCCCTCCTTCACAGACCCCCATCCTTGGGGGGCCCTCCAGTGC AAGGGGGCTGCTCCCTCGAGACGCCAGCCGCCCCCACGTTATAAAGGTGTACAGTGAAGA CGGGGCCTGCCGCTCGGTGGAGGTGGCGGCGGGCGCCACGGCTCGCTACGTGTGCGAGAT GCTCGTGCAGCGGTCTCACGCCCTGAGCGACGAGAACTGGGGGCTGGTGGAGTGCCACCC CCACCTAGCACTGGAGCGGGGCTTGGAGGACCATGAGTCAGTGGTGGAAGTGCAGGCTGC CTGGCCCATTGGCGGAGACAGCCGCTTTGTCTTCAGGAAAAACTTCGCCAAGTATGAACT GTTCAAGAATGCCCCACACTCCCTGTTCCCAGAGAAGATGGTGTCCAGCTGTCTGGACGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTGAAATCAAGTCCAGGTACCTGAGGTTCCTAGACAGAGCCGGACTTCAGCCCCTGTG TCCTGCGACTCCTGCTGGGGCTCTTCCAGATGTCATGGAGCTGGGTCTGTCTCCGTCTCA TCTCAGCAGCTCCCCGGAGGACCTGTACCCCGCCCCTGGGACCCCTCCTGGGACGCCCCC ATCTCCCGATGTCCCTCTGTCTGGGGAGGTAAAGAGGTCCCAGCCTCTGCCCATTCCGAC CAGCAGGAAACTTCGAGAGGAGGAGCCGCGGTCAACCTCTCTACCCGCCATCCCCAACCC CTTCCCCGAGCTCTGCAGCCCTCCTTCACAGACCCCCATCCTTGGGGGGCCCTCCAGTGC AAGGGGGCTGCTCCCTCGAGACGCCAGCCGCCCCCACGTTATAAAGGTGTACAGTGAAGA CGGGGCCTGCCGCTCGGTGGAGGTGGCGGCGGGCGCCACGGCTCGCTACGTGTGCGAGAT GCTCGTGCAGCGGTCTCACGCCCTGAGCGACGAGAACTGGGGGCTGGTGGAGTGCCACCC CCACCTAGCACTGGAGCGGGGCTTGGAGGACCATGAGTCAGTGGTGGAAGTGCAGGCTGC CTGGCCCATTGGCGGAGACAGCCGCTTTGTCTTCAGGAAAAACTTCGCCAAGTATGAACT GTTCAAGAATGCCCCACACTCCCTGTTCCCAGAGAAGATGGTGTCCAGCTGTCTGGACGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 88-250, - strand, RNAz p=0.911894 | |
| 434-554, + strand, RNAz p=0.779014 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 88-250, - strand, RNAz p=0.911894 | |
| 434-554, + strand, RNAz p=0.779014 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 88-250, gnl|bosTau2|chr19 (32378780-32378942) | |
| 88-250, gnl|canFam2|chr9 (26075462-26075209) | |
| 88-250, gnl|dasNov1|scaffold_21712 (19344-19584) | |
| 88-250, gnl|hg17|chr17 (35152061-35152305) | |
| 88-250, gnl|Hg17|chr17 (35152074-35152239) | |
| 88-250, gnl|loxAfr1|scaffold_23059 (43287-43531) | |
| 88-250, gnl|mm7|chr11 (98559787-98560030) | |
| 88-250, gnl|Mm7|chr11 (98559801-98559965) | |
| 88-250, gnl|monDom2|scaffold_18 (48744650-48744896) | |
| 88-250, gnl|panTro1|chr19 (38388734-38388978) | |
| 88-250, gnl|rheMac2|chr16 (49842136-49842380) | |
| 88-250, gnl|rn3|chr10 (87270923-87271166) | |
| 395-554, gnl|bosTau2|chr19 (32379381-32379540) | |
| 395-554, gnl|canFam2|chr9 (26074848-26074664) | |
| 395-554, gnl|danRer3|chr19 (25745597-25745420) | |
| 395-554, gnl|dasNov1|scaffold_21712 (19913-20091) | |
| 395-554, gnl|echTel1|scaffold_278117 (51642-51808) | |
| 395-554, gnl|fr1|chrUn (184689243-184689062) | |
| 395-554, gnl|hg17|chr17 (35152674-35152857) | |
| 395-554, gnl|Hg17|chr17 (35152674-35152833) | |
| 395-554, gnl|loxAfr1|scaffold_14283 (61548-61732) | |
| 395-554, gnl|mm7|chr11 (98560342-98560526) | |
| 395-554, gnl|Mm7|chr11 (98560342-98560501) | |
| 395-554, gnl|monDom2|scaffold_18 (48745367-48745532) | |
| 395-554, gnl|oryCun1|scaffold_183368 (543-359) | |
| 395-554, gnl|panTro1|chr19 (38389347-38389530) | |
| 395-554, gnl|rheMac2|chr16 (49842748-49842931) | |
| 395-554, gnl|rn3|chr10 (87271469-87271653) | |
| 395-554, gnl|tetNig1|chr21 (4372690-4372526) | |
| 395-554, gnl|xenTro1|scaffold_830 (331321-331496) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 88-250, gnl|bosTau2|chr19 (32378780-32378942) | |
| 88-250, gnl|canFam2|chr9 (26075462-26075209) | |
| 88-250, gnl|dasNov1|scaffold_21712 (19344-19584) | |
| 88-250, gnl|hg17|chr17 (35152061-35152305) | |
| 88-250, gnl|Hg17|chr17 (35152074-35152239) | |
| 88-250, gnl|loxAfr1|scaffold_23059 (43287-43531) | |
| 88-250, gnl|mm7|chr11 (98559787-98560030) | |
| 88-250, gnl|Mm7|chr11 (98559801-98559965) | |
| 88-250, gnl|monDom2|scaffold_18 (48744650-48744896) | |
| 88-250, gnl|panTro1|chr19 (38388734-38388978) | |
| 88-250, gnl|rheMac2|chr16 (49842136-49842380) | |
| 88-250, gnl|rn3|chr10 (87270923-87271166) | |
| 395-554, gnl|bosTau2|chr19 (32379381-32379540) | |
| 395-554, gnl|canFam2|chr9 (26074848-26074664) | |
| 395-554, gnl|danRer3|chr19 (25745597-25745420) | |
| 395-554, gnl|dasNov1|scaffold_21712 (19913-20091) | |
| 395-554, gnl|echTel1|scaffold_278117 (51642-51808) | |
| 395-554, gnl|fr1|chrUn (184689243-184689062) | |
| 395-554, gnl|hg17|chr17 (35152674-35152857) | |
| 395-554, gnl|Hg17|chr17 (35152674-35152833) | |
| 395-554, gnl|loxAfr1|scaffold_14283 (61548-61732) | |
| 395-554, gnl|mm7|chr11 (98560342-98560526) | |
| 395-554, gnl|Mm7|chr11 (98560342-98560501) | |
| 395-554, gnl|monDom2|scaffold_18 (48745367-48745532) | |
| 395-554, gnl|oryCun1|scaffold_183368 (543-359) | |
| 395-554, gnl|panTro1|chr19 (38389347-38389530) | |
| 395-554, gnl|rheMac2|chr16 (49842748-49842931) | |
| 395-554, gnl|rn3|chr10 (87271469-87271653) | |
| 395-554, gnl|tetNig1|chr21 (4372690-4372526) | |
| 395-554, gnl|xenTro1|scaffold_830 (331321-331496) |