Non-Coding RNA Search

Ss1.1-Pig2-49P11.5

Sequence:


               
               ACAGACCACCACCTCCTGCACAAGCTCTCGGGACCCAGAGCCTGGTGAGCTTATGGCTCA
ATATCACACCATGTATGGAAATGTTGAAAATCGTCACGGACACGCATGGCAGTGGAGATT
CCAAGCCCCAGTCTAGCATGTTCCACTTGCCTTGAGTCAGAACAAATTTAGTGTAATTAG
AAAAAGGTGGATTAAAAATAACTGCCACGGTTGTCACAGGGAAAGGAGAAATGTGTCTCA
AGAGGGAAGTTACTTTTTCTTCTTGACAAACTCACAGACAAAGTACATGGTCAGGTGGCA
CTCCGTGTCATTCCATCTGCCCGAGCTCAGCATTTCCACACAGTCCTCGTGACCGTAGGG
GTCGCTGGGCTCACCCTCCTGCCAGTTGCTGTAGTTCTGCAGTGGCGTGTTGTCTGTGAA
CACGTACTGGCCCTCCCTCTCCAGGTCGTTTACCCCGATGAACACTCGGAAGAAGCCGCT
CTTGGAGACGTAGTCAGCGAGGAGCGTGTTGGCAGCTTCGTCCTTTGGCATGGCTAACAT
TCCGCCCCGGATCCGGCAGTGGGTCAGGGATTCCCTGTAGTTCTTCTCCTCCTGCACGAT
GTAGTAGAATTTCTCTTCGGTTTCCCGAATCCCTGCTATGACATTCTTGACAAACTTCAT
CGATGTCTTCAGGCGAGCCACACTGATATCCAGTTGTCCAACAACTTTCCGGTATCTTCC
GCAGTCACAGACAGTACCTGCTTTGCCTTTTTCTCCAGGCATCCCAGGCAAACCCTTTTC
TCCTTTGTCACCCTTCTTGCCAATGGGCCCAGTCTTGCCAATGTTGCCCTGGTCTCCTAT
ATCACCCAGTTCACCCTTAATTCCTTTTGGCCCCATGCGTCCCACTTTGCCATGCTTTCC
CTCCTCTCCTGTATCTCCTTTTTCACCATCATCTCCTTTGGGTCCTGGTGAAATTGTGTG
TGTGGCACAGACTTCAGCGGTAGGACGACTGTCGATGTCCAGACCCAGACTCTGAATCTG
CAAAAGAAAGAGCACCAGGAGGATGAACTGGTTTCTTCGAGGTCCAGCTCCAGAGCCACC
CATTGCTGTGGTTCTCCCCAAAGGAGGGTTGCTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGACCACCACCTCCTGCACAAGCTCTCGGGACCCAGAGCCTGGTGAGCTTATGGCTCA
ATATCACACCATGTATGGAAATGTTGAAAATCGTCACGGACACGCATGGCAGTGGAGATT
CCAAGCCCCAGTCTAGCATGTTCCACTTGCCTTGAGTCAGAACAAATTTAGTGTAATTAG
AAAAAGGTGGATTAAAAATAACTGCCACGGTTGTCACAGGGAAAGGAGAAATGTGTCTCA
AGAGGGAAGTTACTTTTTCTTCTTGACAAACTCACAGACAAAGTACATGGTCAGGTGGCA
CTCCGTGTCATTCCATCTGCCCGAGCTCAGCATTTCCACACAGTCCTCGTGACCGTAGGG
GTCGCTGGGCTCACCCTCCTGCCAGTTGCTGTAGTTCTGCAGTGGCGTGTTGTCTGTGAA
CACGTACTGGCCCTCCCTCTCCAGGTCGTTTACCCCGATGAACACTCGGAAGAAGCCGCT
CTTGGAGACGTAGTCAGCGAGGAGCGTGTTGGCAGCTTCGTCCTTTGGCATGGCTAACAT
TCCGCCCCGGATCCGGCAGTGGGTCAGGGATTCCCTGTAGTTCTTCTCCTCCTGCACGAT
GTAGTAGAATTTCTCTTCGGTTTCCCGAATCCCTGCTATGACATTCTTGACAAACTTCAT
CGATGTCTTCAGGCGAGCCACACTGATATCCAGTTGTCCAACAACTTTCCGGTATCTTCC
GCAGTCACAGACAGTACCTGCTTTGCCTTTTTCTCCAGGCATCCCAGGCAAACCCTTTTC
TCCTTTGTCACCCTTCTTGCCAATGGGCCCAGTCTTGCCAATGTTGCCCTGGTCTCCTAT
ATCACCCAGTTCACCCTTAATTCCTTTTGGCCCCATGCGTCCCACTTTGCCATGCTTTCC
CTCCTCTCCTGTATCTCCTTTTTCACCATCATCTCCTTTGGGTCCTGGTGAAATTGTGTG
TGTGGCACAGACTTCAGCGGTAGGACGACTGTCGATGTCCAGACCCAGACTCTGAATCTG
CAAAAGAAAGAGCACCAGGAGGATGAACTGGTTTCTTCGAGGTCCAGCTCCAGAGCCACC
CATTGCTGTGGTTCTCCCCAAAGGAGGGTTGCTCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61867768|ref|XP_589468.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61867768|ref|XP_589468.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               259-378, + strand, RNAz p=0.821592

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-378, + strand, RNAz p=0.821592

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               25-645, gnl|bosTau2|chr14 (26226516-26227135)
               

               
               25-645, gnl|Hg17|chr8 (120187840-120187218)
               


               
               918-1112, gnl|bosTau2|chr14 (26275359-26275552)
               

               
               918-1112, gnl|Hg17|chr8 (120148866-120148675)
               

               
               918-1112, gnl|Mm7|chr15 (54471059-54470871)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-645, gnl|bosTau2|chr14 (26226516-26227135)
               

               
               25-645, gnl|Hg17|chr8 (120187840-120187218)
               


               
               918-1112, gnl|bosTau2|chr14 (26275359-26275552)
               

               
               918-1112, gnl|Hg17|chr8 (120148866-120148675)
               

               
               918-1112, gnl|Mm7|chr15 (54471059-54470871)

	25-645, gnl\|bosTau2\|chr14 (26226516-26227135)
	25-645, gnl\|Hg17\|chr8 (120187840-120187218)

	918-1112, gnl\|bosTau2\|chr14 (26275359-26275552)
	918-1112, gnl\|Hg17\|chr8 (120148866-120148675)
	918-1112, gnl\|Mm7\|chr15 (54471059-54470871)