Non-Coding RNA Search

Ss1.1-Pig2-4K12.5

Sequence:


               
               GTGATCTGTCAAACGTGCCTTATTCGCCGGGGTCTGGCACTCCCGAGATTGGATCTGATA
GGATGTTCCACCCACATGGTCTTTACCCTGTAGACTTTGGAAATGACTAAAGCCTGGAGC
ACAGGGAGCACGTTGCTCTCTTCAGTCCTCAGTAGCCCTCCACGGGTTCGAGAACCTCGT
ATCAGGAAATGCACAGTCATGGGCGTGACCTGGGATGTGTAATGCTTAGCGTTTTATTGC
TGTAGCTGAAATACAAACATCACTCTTCCCTAAGCCTCGAGCAGGAAGCTGTTTAATTCT
TGGAAAAGAAGCATGCACACACTTTCTTAAGAGACAGTGTGCACGGTGGCCGGGTGTGTC
TGGTCTAGGGCCAAAGGTGAATTTTCTTGATGTCTAAGAGAGTTCCCTTGAGCATGCGTC
ATACGAACCGTGGCCAACTTGGCATCAAGGAGGCAAATGGATAGCGTGGGCTACTGCATG
CCTGGGGCAGGATTCTGGGTACACAGCTTGTGCCCGCTAAGAGATGCTGCCGTCCTCCGT
GTGATTCTGGGGAAGGTGTGCTCCTGCTGACAGGGGCATTTCTCTAGACACCAGATGTTC
ATTCGCATCTGCTTCTGATCCTTGGCCAAAAGAAGAAAAACGTAATTGGTAAATGCTCCG
CAAAGAGGAGAGACAGGAAGCTGGGGAGGGAAGGTTTGGCTTCCTTAGGCGCTAACCTCA
CAGGCAGAACCCACCATCAGTCATCCAGAATGGATCTTAGATCTGTTCAGTTCGTTGTTG
CTCTTGTAAAGCAAAACATAGAAACAAGGAAGGCTGTGTCCAGTGCCCTCTGGGGACTGG
TAGGGAAGAATTATTAGTGCAGACCCCTGGGTCTGGCCTGAGTAGACGGAAGGTGGAGGC
GAGACGGGAGGGGAGTGTGGCGTGGCATTCCGCACGCCATCTGAAGGCTCTGCCCTATTC
TCAGGGGAATGAGGCGAGATTTGAGATTTGAAACCTCCTACTCGTGAGCAGCTCTTTCTG
TCCTCTCGCCTCATTTCTCTTTCAATTCCCCTGATGCTCATGAGTTGGGACACGAAGAGG
GTATGATGGGACCCAGTCTGTGAACAAAGGGAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGATCTGTCAAACGTGCCTTATTCGCCGGGGTCTGGCACTCCCGAGATTGGATCTGATA
GGATGTTCCACCCACATGGTCTTTACCCTGTAGACTTTGGAAATGACTAAAGCCTGGAGC
ACAGGGAGCACGTTGCTCTCTTCAGTCCTCAGTAGCCCTCCACGGGTTCGAGAACCTCGT
ATCAGGAAATGCACAGTCATGGGCGTGACCTGGGATGTGTAATGCTTAGCGTTTTATTGC
TGTAGCTGAAATACAAACATCACTCTTCCCTAAGCCTCGAGCAGGAAGCTGTTTAATTCT
TGGAAAAGAAGCATGCACACACTTTCTTAAGAGACAGTGTGCACGGTGGCCGGGTGTGTC
TGGTCTAGGGCCAAAGGTGAATTTTCTTGATGTCTAAGAGAGTTCCCTTGAGCATGCGTC
ATACGAACCGTGGCCAACTTGGCATCAAGGAGGCAAATGGATAGCGTGGGCTACTGCATG
CCTGGGGCAGGATTCTGGGTACACAGCTTGTGCCCGCTAAGAGATGCTGCCGTCCTCCGT
GTGATTCTGGGGAAGGTGTGCTCCTGCTGACAGGGGCATTTCTCTAGACACCAGATGTTC
ATTCGCATCTGCTTCTGATCCTTGGCCAAAAGAAGAAAAACGTAATTGGTAAATGCTCCG
CAAAGAGGAGAGACAGGAAGCTGGGGAGGGAAGGTTTGGCTTCCTTAGGCGCTAACCTCA
CAGGCAGAACCCACCATCAGTCATCCAGAATGGATCTTAGATCTGTTCAGTTCGTTGTTG
CTCTTGTAAAGCAAAACATAGAAACAAGGAAGGCTGTGTCCAGTGCCCTCTGGGGACTGG
TAGGGAAGAATTATTAGTGCAGACCCCTGGGTCTGGCCTGAGTAGACGGAAGGTGGAGGC
GAGACGGGAGGGGAGTGTGGCGTGGCATTCCGCACGCCATCTGAAGGCTCTGCCCTATTC
TCAGGGGAATGAGGCGAGATTTGAGATTTGAAACCTCCTACTCGTGAGCAGCTCTTTCTG
TCCTCTCGCCTCATTTCTCTTTCAATTCCCCTGATGCTCATGAGTTGGGACACGAAGAGG
GTATGATGGGACCCAGTCTGTGAACAAAGGGAAGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               341-540, - strand, RNAz p=0.974644
               

               
               795-907, - strand, RNAz p=0.771764

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               341-540, - strand, RNAz p=0.974644
               

               
               795-907, - strand, RNAz p=0.771764

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               168-1104, gnl|bosTau2|chr19 (17205689-17204748)
               

               
               168-1104, gnl|Hg17|chr17 (1396439-1395168)
               

               
               168-1104, gnl|Mm7|chr11 (75686694-75687848)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-1104, gnl|bosTau2|chr19 (17205689-17204748)
               

               
               168-1104, gnl|Hg17|chr17 (1396439-1395168)
               

               
               168-1104, gnl|Mm7|chr11 (75686694-75687848)

	341-540, - strand, RNAz p=0.974644
	795-907, - strand, RNAz p=0.771764

	168-1104, gnl\|bosTau2\|chr19 (17205689-17204748)
	168-1104, gnl\|Hg17\|chr17 (1396439-1395168)
	168-1104, gnl\|Mm7\|chr11 (75686694-75687848)