Non-Coding RNA Search

Ss1.1-Pig2-4L11.5

Sequence:


               
               TCGTGTTCGTATTGTTACTTACTTATTAGACTTTGAAGATGGAAATTTAAAAAGGAAACT
TTCTATCTTCTATCACCACTGTAACTGGCAGACCTGCCCCTTTGCCACATTTAGAAGCTG
ACTATCCGGGAGCTGAGTACCACCTTCTACCTCTGCCTCTCCTGGGCAGGCCATGCCCCT
GCCTCCAGCATCAGTTTCTTCCATGGTCAGTAGCATCTACTGCATTTCTCTACCTTCATG
GCTACGGGAGAAATGATGAGGTTATGTGTATGAGAATGCCTCTCAAAATAAAAAACACTA
AACGGGAATTTTCAGGGCAAGGAATGATAAGCATCTTGTGCCAGGTCCACTCTGTGCCAA
GCACAGGGGTTACAAACACATATAAATACACCACACACAGTCCCTGCTCTTGGAGTTTGA
AATCAATGAATGCTCCCATTCTGGGGGCGAGAAGTGACAGTAATCCTCCAACAGACACAG
CCCTTTACATGGCCTTCCTTGTCCAGCCCTGTGAGATCCCCAAACAGACTGAGGCTCTGA
GGGGCAGGGAGGTGGCCCCAGGAGGGGCAGAAGTGAGACCAGAGCTCTGCCTATCCCTGC
TTCTCTGCAGGTGTCCCCGAGGAGATGCACGGCCTCTGGGGAGATGCAAGGCCACAGGGC
CATCAGCCTACAGGCACCAAGGTTGTTGCCACCTTGCAGCCACAGCGCTGCCTTCCACCA
CCCAGCCCAAAGGTGCATCTGGGACAGAGGTCCTGCCAAAACAGTCCCCACCGCCCCAGG
GGGCCCTGAAGATGCCATGGCTGCCCAAGAAGTTAATAAAGCCATGGGCAGCAATTAATT
CTGCAGAGGAAAAAGCCAGCCCTGCTGTCCTCCTGGTGCGAGGAGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGTGTTCGTATTGTTACTTACTTATTAGACTTTGAAGATGGAAATTTAAAAAGGAAACT
TTCTATCTTCTATCACCACTGTAACTGGCAGACCTGCCCCTTTGCCACATTTAGAAGCTG
ACTATCCGGGAGCTGAGTACCACCTTCTACCTCTGCCTCTCCTGGGCAGGCCATGCCCCT
GCCTCCAGCATCAGTTTCTTCCATGGTCAGTAGCATCTACTGCATTTCTCTACCTTCATG
GCTACGGGAGAAATGATGAGGTTATGTGTATGAGAATGCCTCTCAAAATAAAAAACACTA
AACGGGAATTTTCAGGGCAAGGAATGATAAGCATCTTGTGCCAGGTCCACTCTGTGCCAA
GCACAGGGGTTACAAACACATATAAATACACCACACACAGTCCCTGCTCTTGGAGTTTGA
AATCAATGAATGCTCCCATTCTGGGGGCGAGAAGTGACAGTAATCCTCCAACAGACACAG
CCCTTTACATGGCCTTCCTTGTCCAGCCCTGTGAGATCCCCAAACAGACTGAGGCTCTGA
GGGGCAGGGAGGTGGCCCCAGGAGGGGCAGAAGTGAGACCAGAGCTCTGCCTATCCCTGC
TTCTCTGCAGGTGTCCCCGAGGAGATGCACGGCCTCTGGGGAGATGCAAGGCCACAGGGC
CATCAGCCTACAGGCACCAAGGTTGTTGCCACCTTGCAGCCACAGCGCTGCCTTCCACCA
CCCAGCCCAAAGGTGCATCTGGGACAGAGGTCCTGCCAAAACAGTCCCCACCGCCCCAGG
GGGCCCTGAAGATGCCATGGCTGCCCAAGAAGTTAATAAAGCCATGGGCAGCAATTAATT
CTGCAGAGGAAAAAGCCAGCCCTGCTGTCCTCCTGGTGCGAGGAGCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               285-403, + strand, RNAz p=0.573133

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               285-403, + strand, RNAz p=0.573133

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               128-530, gnl|bosTau2|chr17 (32865893-32866296)
               

               
               128-530, gnl|Hg17|chr10 (80655583-80655937)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-530, gnl|bosTau2|chr17 (32865893-32866296)
               

               
               128-530, gnl|Hg17|chr10 (80655583-80655937)

	128-530, gnl\|bosTau2\|chr17 (32865893-32866296)
	128-530, gnl\|Hg17\|chr10 (80655583-80655937)