Non-Coding RNA Search

Ss1.1-Pig2-50A04.5

Sequence:


               
               CCTGGGCAGACCCAGCTCCAGACAAGCTGGGCAGCAGGATGGTGCTAGAAGGCACTGCTG
GCGTCCCAGGTGCTGGAGGCAGGAATTGGGCCTGCCAGCCAGAGAGCTGTGCTCCTGGGT
GCTGAGGCCTGGCCCCCCACTCTGGTGCCTCCCTCATCCAGTGGCCCACTGGGCAGGTCA
CCTGCCTGCCTTGCCCACCTGCCAGCCATGTCCAAGCGGCAGGGGTGGGGGTGGCCTCTG
CCCTGCCCGCCGGCCCATGCTCCCTGCCCACCCCGTCCAGTGGTCAGCCCCGTCCTGCCT
AGCCTCACTGGGCCCCTGCTCTGGGGGCTCCTGACCCCTTTCCCTCTGGCCCACCCTCCA
GAGGGAGAGCAAGACAGACGCAGGCACCAGCAGCGCCACAGGAAGAAACCACCTTACCCC
CATGACAAGGTGCCTCCAGCTAGGAGAGGGAGGCCCGCTCTGCCAGCTGCCCCCTGCTCA
CCATCTGGAGCAGCCAGCACACTGCCTGAGGGTCAGACCCTGCTCCAAACTGAGGGGCTA
GCCGACCACGCACCCACCCTTCACCACTGGGTCTCCTCCCTCTACTTCCAGGGAGCCCTG
AGTCGGGAGAGGGGGTGCCANGACCTGGGGCCCGCCCAGCTCANGAACAGGGTGGGTGGG
CAGTGCAAACCTGCAGGGTGTAGGAGGGGAGGCTGGCGGGGGACAACCCCAAGCTGGGAT
ACGCCTCTGGTTCTAGGGGCGCCAAGTCACAGGCAGCACAGGTGAGGGAGGGCTCAAGGC
CAGTGCCAAACACAGGGGATCCCCAGGGGCCATGGGCTCAAGGACGGGAAAGGGGACAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGGCAGACCCAGCTCCAGACAAGCTGGGCAGCAGGATGGTGCTAGAAGGCACTGCTG
GCGTCCCAGGTGCTGGAGGCAGGAATTGGGCCTGCCAGCCAGAGAGCTGTGCTCCTGGGT
GCTGAGGCCTGGCCCCCCACTCTGGTGCCTCCCTCATCCAGTGGCCCACTGGGCAGGTCA
CCTGCCTGCCTTGCCCACCTGCCAGCCATGTCCAAGCGGCAGGGGTGGGGGTGGCCTCTG
CCCTGCCCGCCGGCCCATGCTCCCTGCCCACCCCGTCCAGTGGTCAGCCCCGTCCTGCCT
AGCCTCACTGGGCCCCTGCTCTGGGGGCTCCTGACCCCTTTCCCTCTGGCCCACCCTCCA
GAGGGAGAGCAAGACAGACGCAGGCACCAGCAGCGCCACAGGAAGAAACCACCTTACCCC
CATGACAAGGTGCCTCCAGCTAGGAGAGGGAGGCCCGCTCTGCCAGCTGCCCCCTGCTCA
CCATCTGGAGCAGCCAGCACACTGCCTGAGGGTCAGACCCTGCTCCAAACTGAGGGGCTA
GCCGACCACGCACCCACCCTTCACCACTGGGTCTCCTCCCTCTACTTCCAGGGAGCCCTG
AGTCGGGAGAGGGGGTGCCANGACCTGGGGCCCGCCCAGCTCANGAACAGGGTGGGTGGG
CAGTGCAAACCTGCAGGGTGTAGGAGGGGAGGCTGGCGGGGGACAACCCCAAGCTGGGAT
ACGCCTCTGGTTCTAGGGGCGCCAAGTCACAGGCAGCACAGGTGAGGGAGGGCTCAAGGC
CAGTGCCAAACACAGGGGATCCCCAGGGGCCATGGGCTCAAGGACGGGAAAGGGGACAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               133-445, - strand, RNAz p=1

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               133-445, - strand, RNAz p=1

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               301-406, - strand, RNAmicro p=0.999407
               

               
               248-375, + strand, RNAmicro p=0.967546

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               301-406, - strand, RNAmicro p=0.999407
               

               
               248-375, + strand, RNAmicro p=0.967546

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               310-437, 201931 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE750524.1|), 
blast E-value=5e-31, identity=89.84% 
               

               
               310-437, 202006 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE750574.1|), 
blast E-value=5e-31, identity=89.84% 
               

               
               310-437, 265319 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF600588.1|), 
blast E-value=1e-28, identity=89.06% 
               

               
               310-437, 269659 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF603997.1|), 
blast E-value=1e-28, identity=89.06% 
               

               
               310-437, 4092482 BARC 10BOV Bos taurus cDNA clone 10BOV30_G01 5', mRNA 
(gb|CK952989.1|), blast E-value=1e-28, identity=89.06% 
               

               
               310-437, LB03072.CR_D07 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE383284.1|), 
blast E-value=1e-28, identity=89.06%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               310-437, 201931 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE750524.1|), 
blast E-value=5e-31, identity=89.84% 
               

               
               310-437, 202006 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE750574.1|), 
blast E-value=5e-31, identity=89.84% 
               

               
               310-437, 265319 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF600588.1|), 
blast E-value=1e-28, identity=89.06% 
               

               
               310-437, 269659 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF603997.1|), 
blast E-value=1e-28, identity=89.06% 
               

               
               310-437, 4092482 BARC 10BOV Bos taurus cDNA clone 10BOV30_G01 5', mRNA 
(gb|CK952989.1|), blast E-value=1e-28, identity=89.06% 
               

               
               310-437, LB03072.CR_D07 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE383284.1|), 
blast E-value=1e-28, identity=89.06%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               133-824, gnl|bosTau2|chr25 (4289780-4290480)
               

               
               133-824, gnl|Hg17|chr16 (4327785-4328606)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               133-824, gnl|bosTau2|chr25 (4289780-4290480)
               

               
               133-824, gnl|Hg17|chr16 (4327785-4328606)

	301-406, - strand, RNAmicro p=0.999407
	248-375, + strand, RNAmicro p=0.967546

	310-437, 201931 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE750524.1\|), blast E-value=5e-31, identity=89.84%
	310-437, 202006 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE750574.1\|), blast E-value=5e-31, identity=89.84%
	310-437, 265319 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF600588.1\|), blast E-value=1e-28, identity=89.06%
	310-437, 269659 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF603997.1\|), blast E-value=1e-28, identity=89.06%
	310-437, 4092482 BARC 10BOV Bos taurus cDNA clone 10BOV30_G01 5', mRNA (gb\|CK952989.1\|), blast E-value=1e-28, identity=89.06%
	310-437, LB03072.CR_D07 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE383284.1\|), blast E-value=1e-28, identity=89.06%

	133-824, gnl\|bosTau2\|chr25 (4289780-4290480)
	133-824, gnl\|Hg17\|chr16 (4327785-4328606)