Non-Coding RNA Search

Ss1.1-Pig2-50C20.5

Sequence:


               
               GACGCCACTGCACTATGCAGCCGCCAACGGCAGCTACCAGTGTGCTGTGACGCTGGTCAC
TGCTGGGGCAGGTGTCAATGAGGCTGACTGCAAAGGCTGCTCTCCCCTCCACTACGCTGC
TGCCTCTGACACCTAAAGGAGGTGAGGCATCCACTTTGTCCTTCTGAGCCCCACTCATCT
TCCAGCCACGATGCTGAAGAGGACGAGCCACTGAAGGAGTCCCGCCGGAAGGAGGCCTTC
TTGTGAGTAGCTGAAGAGTCTCCCTGGGGTGCGCTTCCTCAGCAGTGCCCACCCTGATCC
CGTTATTCTCCCACCACCACCCTGCTGCTGCTGTGCACCCTGCGTTTGGTCCTGGACCAA
GCACTGTGGGTACAGACCAAAGCAGGAGACGTGGTTCCTTCCCTCAAGGAATGGATGTTC
TTCCTGAGGGGATCAGAAAAGCTGAACACACAAATTCATTTGTTTATTCCACAAGCAGTA
ATTGAGTATTTACTTACTAGGTCCAAGTACTATGCTAGGTGGTAAGGATAAAAGGTAAAT
TACCTCAAATTTCTGCCCTTTGAAAGCTAATAATCTATTGAAAAATAAAAACGAAAGGGA
CACTCATACGTTCTTGCGTAGATGTTAACAACGGGGGAGACTCAGTGAGGAACATGTGGG
AACTCCATTATCCTCACAATTTTTCTGTAAATCTAAACTGTTACAAAAGTCTTGTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGCCACTGCACTATGCAGCCGCCAACGGCAGCTACCAGTGTGCTGTGACGCTGGTCAC
TGCTGGGGCAGGTGTCAATGAGGCTGACTGCAAAGGCTGCTCTCCCCTCCACTACGCTGC
TGCCTCTGACACCTAAAGGAGGTGAGGCATCCACTTTGTCCTTCTGAGCCCCACTCATCT
TCCAGCCACGATGCTGAAGAGGACGAGCCACTGAAGGAGTCCCGCCGGAAGGAGGCCTTC
TTGTGAGTAGCTGAAGAGTCTCCCTGGGGTGCGCTTCCTCAGCAGTGCCCACCCTGATCC
CGTTATTCTCCCACCACCACCCTGCTGCTGCTGTGCACCCTGCGTTTGGTCCTGGACCAA
GCACTGTGGGTACAGACCAAAGCAGGAGACGTGGTTCCTTCCCTCAAGGAATGGATGTTC
TTCCTGAGGGGATCAGAAAAGCTGAACACACAAATTCATTTGTTTATTCCACAAGCAGTA
ATTGAGTATTTACTTACTAGGTCCAAGTACTATGCTAGGTGGTAAGGATAAAAGGTAAAT
TACCTCAAATTTCTGCCCTTTGAAAGCTAATAATCTATTGAAAAATAAAAACGAAAGGGA
CACTCATACGTTCTTGCGTAGATGTTAACAACGGGGGAGACTCAGTGAGGAACATGTGGG
AACTCCATTATCCTCACAATTTTTCTGTAAATCTAAACTGTTACAAAAGTCTTGTTTAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-183, - strand, RNAz p=0.602129

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-183, - strand, RNAz p=0.602129

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-183, gnl|bosTau2|chr5 (33376598-33376779)
               

               
               1-183, gnl|Hg17|chr12 (54932366-54932184)
               

               
               1-183, gnl|Mm7|chr10 (127885066-127885251)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-183, gnl|bosTau2|chr5 (33376598-33376779)
               

               
               1-183, gnl|Hg17|chr12 (54932366-54932184)
               

               
               1-183, gnl|Mm7|chr10 (127885066-127885251)

	1-183, gnl\|bosTau2\|chr5 (33376598-33376779)
	1-183, gnl\|Hg17\|chr12 (54932366-54932184)
	1-183, gnl\|Mm7\|chr10 (127885066-127885251)