Non-Coding RNA Search

Ss1.1-Pig2-52J14.5

Sequence:


               
               GTGACCTGTTCAGCCTGGCTGTTGGGCATCCCCGGCTTTCAGCAGCACTGGAGGAAACGG
AGCCATGATGGGCAACACACCAGGCAACAGCCGGGTCCTGCAATGACTGGAAACTCAGCC
AGCGGTTTCCAGGAGATTCTCCACTCACCAGGAAATTGCCCAGCTGAATGGAGACAGGGA
GTTGCTCCTCTGGTCCTCAGAAAGGAAAGAGAACCAGCAACGACTGCCTCTTCCACTGGC
ATCTCTACCTGGTCAAAGAACCAACCAGTCACAAAAGAAAACCTTGGTGAACATCAGTGG
GGAGAATGAAATTATGCTCAATCAGCAGGATGACCTCAAAATGATGAGGAAACAAGTTCA
CAGTGGATTAGGAATGTGCCTGAGTTCATCCAGAGCCTGAAGAGGCCATTGGTTCTATGC
CCCAATGCCTGTATATATGATGGGACAGTGAATCTGGGTGCTTTCTGTGCTCCATGTGGA
GAAAGTGAAGCAGTCACTCTTGTCATCTCTCTAAAGAACTGAGTTGGAGCGCGTCTTTGG
ATAGGAGCCGTGCTGCTGCTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACCTGTTCAGCCTGGCTGTTGGGCATCCCCGGCTTTCAGCAGCACTGGAGGAAACGG
AGCCATGATGGGCAACACACCAGGCAACAGCCGGGTCCTGCAATGACTGGAAACTCAGCC
AGCGGTTTCCAGGAGATTCTCCACTCACCAGGAAATTGCCCAGCTGAATGGAGACAGGGA
GTTGCTCCTCTGGTCCTCAGAAAGGAAAGAGAACCAGCAACGACTGCCTCTTCCACTGGC
ATCTCTACCTGGTCAAAGAACCAACCAGTCACAAAAGAAAACCTTGGTGAACATCAGTGG
GGAGAATGAAATTATGCTCAATCAGCAGGATGACCTCAAAATGATGAGGAAACAAGTTCA
CAGTGGATTAGGAATGTGCCTGAGTTCATCCAGAGCCTGAAGAGGCCATTGGTTCTATGC
CCCAATGCCTGTATATATGATGGGACAGTGAATCTGGGTGCTTTCTGTGCTCCATGTGGA
GAAAGTGAAGCAGTCACTCTTGTCATCTCTCTAAAGAACTGAGTTGGAGCGCGTCTTTGG
ATAGGAGCCGTGCTGCTGCTGACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               166-313, - strand, RNAz p=0.9972

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               166-313, - strand, RNAz p=0.9972

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               82-354, gnl|bosTau2|chr20 (9598491-9598209)
               

               
               82-354, gnl|Hg17|chr5 (61209742-61210052)
               

               
               82-354, gnl|Mm7|chr13 (104523999-104523721)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-354, gnl|bosTau2|chr20 (9598491-9598209)
               

               
               82-354, gnl|Hg17|chr5 (61209742-61210052)
               

               
               82-354, gnl|Mm7|chr13 (104523999-104523721)

	82-354, gnl\|bosTau2\|chr20 (9598491-9598209)
	82-354, gnl\|Hg17\|chr5 (61209742-61210052)
	82-354, gnl\|Mm7\|chr13 (104523999-104523721)