Non-Coding RNA Search

Ss1.1-Pig2-52M14.5

Sequence:


               
               GAAAACCAACAACTTTTCTTTTGTGTGTGGGGTTACTTTCCACTAGCCCCCCTTCCTCCT
CTCCTTTCAAGATTTAAATGCTAATGGCGGATTAAAACCTGTAGATACGTGTGGCTTTGG
GAGTCTGGTCCATCGGGGTGACTGTCTGGTTTCACCACGATGACGCTCCATGCCACCCGG
GCGGCTGCACTCCTCTCTTGGGTAAACAGTCTGCATGTGGCCGACCCCGTGGAAGCCGTG
CTGCAGCTCCAGGACTGTAGTGTCTTCATCAAGATCATAGACAGCATCCGTGGCGCTGAC
AGAGGACAGCAAATCCTGCAGCAGCCGGTGCCAGAGAGACTGGAATTTGTGTGCAGTTTT
CTGCAGAAAAACCGGAAGCATCCCTCTTCTCCAGAATGCCTGGTGTCAGTGCAGAAGGTG
ATGGAGGGGTCAGAGCTGGAACTGGCCAAGGTGATCATGCTGCTCTTATACCATTCCTCC
ATAAGCTCCCAAAGCCCCAGGGACTGGGACCAGTTTGAACACAAGATCCAGGTACGCCCT
CCGGCCTCCACCCCTGCAGCAGGCCTAGCCTGTGCTTCACCTCACCCCATTGGTTTTTCT
TAAAACAGCATATGTTGTTCTTTTAAAAAATTAGGCTGTAGTAGTTACAGCCATTCATTA
TAGAGAGTCTGGAAAATGTTGAAAAGCACCAAGAAGGCAGTAACGGTTGTCAGTAACCTC
TTCTCAGCGCTCTTTTCCCTGCACCCGCACCTGAAGTGGGTTCGGATGGTAGATGGGGGT
TGTTCGGTCTTCATGGATGTGTTCCTGTGGTTTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAACCAACAACTTTTCTTTTGTGTGTGGGGTTACTTTCCACTAGCCCCCCTTCCTCCT
CTCCTTTCAAGATTTAAATGCTAATGGCGGATTAAAACCTGTAGATACGTGTGGCTTTGG
GAGTCTGGTCCATCGGGGTGACTGTCTGGTTTCACCACGATGACGCTCCATGCCACCCGG
GCGGCTGCACTCCTCTCTTGGGTAAACAGTCTGCATGTGGCCGACCCCGTGGAAGCCGTG
CTGCAGCTCCAGGACTGTAGTGTCTTCATCAAGATCATAGACAGCATCCGTGGCGCTGAC
AGAGGACAGCAAATCCTGCAGCAGCCGGTGCCAGAGAGACTGGAATTTGTGTGCAGTTTT
CTGCAGAAAAACCGGAAGCATCCCTCTTCTCCAGAATGCCTGGTGTCAGTGCAGAAGGTG
ATGGAGGGGTCAGAGCTGGAACTGGCCAAGGTGATCATGCTGCTCTTATACCATTCCTCC
ATAAGCTCCCAAAGCCCCAGGGACTGGGACCAGTTTGAACACAAGATCCAGGTACGCCCT
CCGGCCTCCACCCCTGCAGCAGGCCTAGCCTGTGCTTCACCTCACCCCATTGGTTTTTCT
TAAAACAGCATATGTTGTTCTTTTAAAAAATTAGGCTGTAGTAGTTACAGCCATTCATTA
TAGAGAGTCTGGAAAATGTTGAAAAGCACCAAGAAGGCAGTAACGGTTGTCAGTAACCTC
TTCTCAGCGCTCTTTTCCCTGCACCCGCACCTGAAGTGGGTTCGGATGGTAGATGGGGGT
TGTTCGGTCTTCATGGATGTGTTCCTGTGGTTTGCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|27694103|gb|AAH43499.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27694103|gb|AAH43499.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               117-219, gnl|bosTau2|chr15 (30001347-30001449)
               

               
               117-219, gnl|Hg17|chr11 (71424680-71424579)
               

               
               117-219, gnl|Mm7|chr7 (98023469-98023568)
               


               
               446-728, gnl|bosTau2|chr15 (30013936-30014222)
               

               
               446-728, gnl|Hg17|chr11 (71411118-71410835)
               

               
               446-728, gnl|Mm7|chr7 (98038733-98039015)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-219, gnl|bosTau2|chr15 (30001347-30001449)
               

               
               117-219, gnl|Hg17|chr11 (71424680-71424579)
               

               
               117-219, gnl|Mm7|chr7 (98023469-98023568)
               


               
               446-728, gnl|bosTau2|chr15 (30013936-30014222)
               

               
               446-728, gnl|Hg17|chr11 (71411118-71410835)
               

               
               446-728, gnl|Mm7|chr7 (98038733-98039015)

	117-219, gnl\|bosTau2\|chr15 (30001347-30001449)
	117-219, gnl\|Hg17\|chr11 (71424680-71424579)
	117-219, gnl\|Mm7\|chr7 (98023469-98023568)

	446-728, gnl\|bosTau2\|chr15 (30013936-30014222)
	446-728, gnl\|Hg17\|chr11 (71411118-71410835)
	446-728, gnl\|Mm7\|chr7 (98038733-98039015)