Non-Coding RNA Search

Ss1.1-Pig2-53O15.5

Sequence:


               
               GGAGAGGGCTTCCTCTCCATGTTCCTTTTCTGGAACTCCCTGGCACCGAGGCCGGTGTGA
CGGGACTGCCTCTGAAAAGTCCCAGTCCATAGGCTGTTCTAGGCACCGCTCCTGGACCAG
ACAGAGCCGGTCATGGCCGAGGAGGTATGGGTGGGCACCTGGAGACCCCATCGCCCCCGG
GGGCCCATCATGGCCCTCTACAGCAGCCCTGGACCCAAGTACCTGATTCCACCCACCACG
GGCTTTGTCAAGCACACGCCCACCAAGCTGCGTGCACCAGCCTACAGCTTCCGAGGGGCC
CCCATGCTCCTGGCAGAGAACTGCTCCCCAGGGCCCCGCTACAGCGTGAACCCCAAGATA
CTGAGGACTGGCAAAGACCTCAGCCCCACCTACTCCATCCTGGGGCGCTACAGCACTAAG
GCCACACTGACCCCCGGCCCTGGCGACTACTTCCCAGAGAAATCTACCAAGCACGTGTTC
GATGCAGCACCCAGCCACTCCATTTCCGCCCGAACCAAGACCTTCCGAGTGGACAGCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAGGGCTTCCTCTCCATGTTCCTTTTCTGGAACTCCCTGGCACCGAGGCCGGTGTGA
CGGGACTGCCTCTGAAAAGTCCCAGTCCATAGGCTGTTCTAGGCACCGCTCCTGGACCAG
ACAGAGCCGGTCATGGCCGAGGAGGTATGGGTGGGCACCTGGAGACCCCATCGCCCCCGG
GGGCCCATCATGGCCCTCTACAGCAGCCCTGGACCCAAGTACCTGATTCCACCCACCACG
GGCTTTGTCAAGCACACGCCCACCAAGCTGCGTGCACCAGCCTACAGCTTCCGAGGGGCC
CCCATGCTCCTGGCAGAGAACTGCTCCCCAGGGCCCCGCTACAGCGTGAACCCCAAGATA
CTGAGGACTGGCAAAGACCTCAGCCCCACCTACTCCATCCTGGGGCGCTACAGCACTAAG
GCCACACTGACCCCCGGCCCTGGCGACTACTTCCCAGAGAAATCTACCAAGCACGTGTTC
GATGCAGCACCCAGCCACTCCATTTCCGCCCGAACCAAGACCTTCCGAGTGGACAGCACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50949343|emb|CAH10709.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50949343|emb|CAH10709.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               19-118, - strand, RNAz p=0.680023
               

               
               302-446, - strand, RNAz p=0.887385

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-118, - strand, RNAz p=0.680023
               

               
               302-446, - strand, RNAz p=0.887385

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-118, gnl|bosTau2|chr29 (45613455-45613338)
               

               
               1-118, gnl|canFam2|chr18 (28343221-28343344)
               

               
               1-118, gnl|galGal2|chrUn (149863236-149863374)
               

               
               1-118, gnl|hg17|chr11 (186767-186881)
               

               
               1-118, gnl|Hg17|chr11 (186795-186913)
               

               
               1-118, gnl|loxAfr1|scaffold_91623 (1172-1073)
               

               
               1-118, gnl|mm7|chr7 (137265049-137265164)
               

               
               1-118, gnl|Mm7|chr7 (137265075-137265194)
               

               
               1-118, gnl|monDom2|scaffold_70 (2140639-2140531)
               

               
               1-118, gnl|oryCun1|scaffold_158469 (13628-13518)
               

               
               1-118, gnl|rheMac2|chr14 (7454-7565)
               

               
               1-118, gnl|rn3|chr1 (201155339-201155448)
               

               
               1-118, gnl|xenTro1|scaffold_399 (213398-213278)
               


               
               225-446, gnl|bosTau2|chr29 (45612645-45612424)
               

               
               225-446, gnl|Hg17|chr11 (187542-187765)
               

               
               225-446, gnl|Mm7|chr7 (137265856-137266078)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-118, gnl|bosTau2|chr29 (45613455-45613338)
               

               
               1-118, gnl|canFam2|chr18 (28343221-28343344)
               

               
               1-118, gnl|galGal2|chrUn (149863236-149863374)
               

               
               1-118, gnl|hg17|chr11 (186767-186881)
               

               
               1-118, gnl|Hg17|chr11 (186795-186913)
               

               
               1-118, gnl|loxAfr1|scaffold_91623 (1172-1073)
               

               
               1-118, gnl|mm7|chr7 (137265049-137265164)
               

               
               1-118, gnl|Mm7|chr7 (137265075-137265194)
               

               
               1-118, gnl|monDom2|scaffold_70 (2140639-2140531)
               

               
               1-118, gnl|oryCun1|scaffold_158469 (13628-13518)
               

               
               1-118, gnl|rheMac2|chr14 (7454-7565)
               

               
               1-118, gnl|rn3|chr1 (201155339-201155448)
               

               
               1-118, gnl|xenTro1|scaffold_399 (213398-213278)
               


               
               225-446, gnl|bosTau2|chr29 (45612645-45612424)
               

               
               225-446, gnl|Hg17|chr11 (187542-187765)
               

               
               225-446, gnl|Mm7|chr7 (137265856-137266078)

	19-118, - strand, RNAz p=0.680023
	302-446, - strand, RNAz p=0.887385

	1-118, gnl\|bosTau2\|chr29 (45613455-45613338)
	1-118, gnl\|canFam2\|chr18 (28343221-28343344)
	1-118, gnl\|galGal2\|chrUn (149863236-149863374)
	1-118, gnl\|hg17\|chr11 (186767-186881)
	1-118, gnl\|Hg17\|chr11 (186795-186913)
	1-118, gnl\|loxAfr1\|scaffold_91623 (1172-1073)
	1-118, gnl\|mm7\|chr7 (137265049-137265164)
	1-118, gnl\|Mm7\|chr7 (137265075-137265194)
	1-118, gnl\|monDom2\|scaffold_70 (2140639-2140531)
	1-118, gnl\|oryCun1\|scaffold_158469 (13628-13518)
	1-118, gnl\|rheMac2\|chr14 (7454-7565)
	1-118, gnl\|rn3\|chr1 (201155339-201155448)
	1-118, gnl\|xenTro1\|scaffold_399 (213398-213278)

	225-446, gnl\|bosTau2\|chr29 (45612645-45612424)
	225-446, gnl\|Hg17\|chr11 (187542-187765)
	225-446, gnl\|Mm7\|chr7 (137265856-137266078)